View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21594_high_6 (Length: 422)
Name: NF21594_high_6
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21594_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 12555171 - 12555560
Alignment:
| Q |
1 |
taggtcagtggaaaaatatttcagaaacgcgatttcaacatattaggagcggcaagagccatttaatagccaaggaatcatcaatcgataatcctttact |
100 |
Q |
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| T |
12555171 |
taggttagtggaaatatattttaaaaatgcgatttcaacatattaggagcgacaagagccatttaataaccaaggaatcatcaatcgataatcctttact |
12555270 |
T |
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| Q |
101 |
catgttttcttatgtttataaattatgagtagttaattctctctaaattgggtcatgaaagaggatcttccttgtaattgtttgataatatgtaccttta |
200 |
Q |
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| T |
12555271 |
catgttttcttatgtttataaattatgagtagttaattctctctagattaggtcatgaaagaggatcttccttgtaattgtttgatcatatgtaccttta |
12555370 |
T |
|
| Q |
201 |
aattattcaataaattcagtttattactttgatattttattcggttactcttgttcatagtg-ttttttatgcatataggaatgttgatgaattgattta |
299 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
12555371 |
aatt---------attcagtttattactttgatattttattaagttactcttgttcttagtgtttttttatacatataggaatgttgatgaattgattta |
12555461 |
T |
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| Q |
300 |
tgtattaacgattactaaccgtaactttgatggatctacttattttagccgttcagttattggttagcttagacataatgtaatgataattatgtactt |
398 |
Q |
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| T |
12555462 |
tgtattaacgattactaaccgtaactttgatggatctatctattttaaccgtttaattattggttagtttaaacataatgtaatgataattatgtactt |
12555560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 4729664 - 4729589
Alignment:
| Q |
111 |
tatgtttataaattatgagtagttaattctctctaaattgggtcatgaaagaggatcttccttgtaattgtttgat |
186 |
Q |
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| T |
4729664 |
tatgtttagaagttatgagtagctaatcccctctagattaggtcataaaagaggaacttccatgtaattgtttgat |
4729589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 277
Target Start/End: Complemental strand, 28485269 - 28485104
Alignment:
| Q |
111 |
tatgtttataaattatgagtagttaattctctctaaattgggtcatgaaagaggatcttccttgtaattgtttgataatatgtacctttaaattattcaa |
210 |
Q |
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| T |
28485269 |
tatgtttaggaactatgagtagctaatcctctctaggttaggtcatgaaagaggaaatttcttgtaattgtctgat--tatgtaactttaaattatacta |
28485172 |
T |
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| Q |
211 |
taaat-tcagtttattactttgatattttattcggttactcttgttcatagtgttttttatgcatata |
277 |
Q |
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| T |
28485171 |
tgaatctcatttgattactttgctattttatttggttaatattgttcctaacgtcttttatgcatata |
28485104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 10248303 - 10248208
Alignment:
| Q |
151 |
ggtcatgaaagaggatcttccttgtaattgtttgataatatgtacctttaaattattcaataaa-ttcagtttattactttgatattttattcggtta |
247 |
Q |
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| T |
10248303 |
ggtcatgaaataagaacttcctcgtaattgtttgat--tatgtaactttgaataattctataaatttcatttaattacttttctattttattcggtta |
10248208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 17785004 - 17784923
Alignment:
| Q |
105 |
ttttcttatgtttataaattatgagtagttaattctctctaaattgggtcatgaaagaggatcttccttgtaattgtttgat |
186 |
Q |
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|||| ||||||||| || ||||||||||||||| ||||| || |||||||||||| | ||||| |||||||||||||| |
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| T |
17785004 |
tttttttatgtttagaagctatgagtagttaattacctctaggttaggtcatgaaagaataacttccatgtaattgtttgat |
17784923 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 3092089 - 3092034
Alignment:
| Q |
151 |
ggtcatgaaagaggatcttccttgtaattgtttgataatatgtacctttaaattattc |
208 |
Q |
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| T |
3092089 |
ggtcatgaaagaggaacttccttttaactgtttgat--tatgtaactttaaattattc |
3092034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 23375444 - 23375395
Alignment:
| Q |
151 |
ggtcatgaaagaggatcttccttgtaattgtttgataatatgtacctttaaa |
202 |
Q |
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| T |
23375444 |
ggtcatgaaagaggaacttccttgtaattgttcgat--tatgtaactttaaa |
23375395 |
T |
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