View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21594_high_7 (Length: 422)
Name: NF21594_high_7
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21594_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 42113829 - 42114210
Alignment:
| Q |
20 |
tatccatgtggatctacaaatatatatttacgaaatatttagtttacatttcacaaaaatacccgtaggcttagttcaagacaacaagaaacgtttgacg |
119 |
Q |
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| T |
42113829 |
tatccatgtggatctacaaatatatatttacgaaatatttagtttacatttcacaaaaatacccgtaggcttagtt--agacaacaagaaacgtttgacg |
42113926 |
T |
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| Q |
120 |
tgtatggtcctggctaaattgctgtcatatttacttttttaggataaaaaacatataataagagagaaatttacaatctacatcagacaagaataagata |
219 |
Q |
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| T |
42113927 |
tgtatggtcctggctaaattgctgtcatatttacttttttaggataaaaaacatataataagagagaaatttacaatctacatcagacaagaataagata |
42114026 |
T |
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| Q |
220 |
tgtcctagtaaaagaaacataaaatcaaatatgaagaagaaacatttaacacttaaaaaccaaatacgaagacaaaaatagatcaactagcctagcttgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42114027 |
tgtcctagtaaaagaaacataaaatcaaatatgaagaagaaacatttaacacttaaaaaccaaatacgaagacaaaaatagatcaactagcctagcttgc |
42114126 |
T |
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| Q |
320 |
caatctccttctcaaaactagtgcggtttgcaagaaagtatggtcatttcnnnnnnncagccatacttgtattggacatatctgtg |
405 |
Q |
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| T |
42114127 |
caatctcct--tcaaaactagtgcggtttgcaagaaagtatggtcatttcaaaataacagccatacttgtattggacatatctgtg |
42114210 |
T |
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