View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21594_high_8 (Length: 375)
Name: NF21594_high_8
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21594_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 47074355 - 47074010
Alignment:
| Q |
19 |
acttgtcaatggaagattccaacnnnnnnnnatcatcaacttgtgaaacataatgaaatcaatcgctaatgaacaccctacaattttttaacttcttttt |
118 |
Q |
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| T |
47074355 |
acttgtcaatggaagattccaactttttta-atcatcaacttgtgaaacataatgaaatcaatcgctaatgaacaccctacaattttttaacttcttttt |
47074257 |
T |
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| Q |
119 |
tggttctgagtaacttggtgtgatattatcactatcttgcctaatgaacaccctacaatttatgtaggctataatggaggttggagaagttattcagttc |
218 |
Q |
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| T |
47074256 |
tggttctgagtaacttggtgtgatattatcactatcttgcctaatgaacaccctacaatttatgtaggctataatggaggttggagaagttatacagttc |
47074157 |
T |
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| Q |
219 |
tatgattctgataagcggtttcctgcttggggatttggaggaaagatacccggaggtatcgtatctcattgttttaatctgaatgggagtctaactagct |
318 |
Q |
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| T |
47074156 |
tatgattctgataagcggtttcctgcttggggatttggaggaaagatacctggaggtatcgtatctcattgttttaatctgaatgggagtctaactagct |
47074057 |
T |
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| Q |
319 |
ctgaggtgagaacctctcttccgnnnnnnnagtacaatggtcctttg |
365 |
Q |
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| T |
47074056 |
ctgaggtgagaacctctcttctgtttttttagtacaatggtcctttg |
47074010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 47055761 - 47055601
Alignment:
| Q |
144 |
ttatcactatcttgcctaatgaacaccctacaatttatgtaggctataatggaggttggagaagttattcagttctatgattctgataagcggtttcctg |
243 |
Q |
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| T |
47055761 |
ttatcagtgtcttgcctaatgaacatagtaaaatttgtgtaggttataatggaggttggagaagttattcagttctatgattctgataagctgtttcctg |
47055662 |
T |
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| Q |
244 |
cttggggatttggaggaaagatacccggaggtatcgtatctcattgttttaatctgaatgg |
304 |
Q |
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| T |
47055661 |
cttggggatttggaggaaatgtacacggtggttctgtatctcactgttttaatctgaatgg |
47055601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 18231161 - 18231316
Alignment:
| Q |
175 |
aatttatgtaggctataatggaggttggagaagttattcagttctatgattctgataagcggtttcctgcttggggatttggaggaaagatacccggagg |
274 |
Q |
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| T |
18231161 |
aatttatgtaggctattatggaggttggagaagttattcagttctacgattctgataagctgtttcctgcttggggatttggaggaaagatacccggagg |
18231260 |
T |
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| Q |
275 |
tatcgtatctcattgttttaatctgaatgggagtctaactagctctgaggtgagaa |
330 |
Q |
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|| | ||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
18231261 |
taccatatctcattgttttaatctcaatgggagtccaactagctccgaggtgagaa |
18231316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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