View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21594_low_1 (Length: 819)

Name: NF21594_low_1
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21594_low_1
NF21594_low_1
[»] chr3 (2 HSPs)
chr3 (17-634)||(1310237-1310857)
chr3 (733-774)||(19932296-19932337)
[»] chr8 (3 HSPs)
chr8 (591-741)||(44667629-44667781)
chr8 (733-810)||(5538436-5538515)
chr8 (591-712)||(6816851-6816978)
[»] scaffold0003 (1 HSPs)
scaffold0003 (733-810)||(8966-9041)
[»] chr7 (3 HSPs)
chr7 (733-810)||(16420254-16420329)
chr7 (647-739)||(28382724-28382816)
chr7 (647-741)||(28387076-28387170)
[»] chr6 (1 HSPs)
chr6 (591-712)||(34518754-34518880)
[»] chr4 (1 HSPs)
chr4 (628-741)||(28657501-28657613)
[»] chr2 (1 HSPs)
chr2 (641-729)||(2037938-2038026)
[»] chr5 (1 HSPs)
chr5 (761-803)||(37940550-37940592)
[»] chr1 (4 HSPs)
chr1 (761-803)||(18901445-18901487)
chr1 (733-774)||(18901508-18901549)
chr1 (770-803)||(51784859-51784892)
chr1 (735-774)||(51784794-51784833)


Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 17 - 634
Target Start/End: Complemental strand, 1310857 - 1310237
Alignment:
Q  17 acaaaaaatcttaatactaattgaaatatatatttaatttacatctagaaagtttcagaattaaatattataaatataaatatactatctataataagtt 116  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1310857 acaaaaaatcttaatactaattgaaaaatatatttaatttacctcttgaaagtttcagaattaagtattataaatataaatatactatctataataagtt 1310758  T
Q  117 caggaatataccagtaacatattttcattagcaaaactatttcaacactacctaattcaaaatatcattattctttcttttctataaacatgttatgtac 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1310757 caggaatataccagtaacatattttcaatagcaaaactatttcaacactacttaattcaaaatatcattattctttcttttctataaacatgttatgtac 1310658  T
Q  217 gtgatgccttgaatt-atagaaattctatacagtttgtttgctaaatatcacagtatcttcaaagtcataattcgaattgaacaacattcaagtttccaa 315  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  1310657 gtgatgccttgaattgatagaaattctatacagtttgtttgctaaatatcatagtatcttcaaagtcataattctaattgaacaaaattcaagtttccaa 1310558  T
Q  316 aaccaacatttcaaacgaaagaaaagaaatctacacttagaataaatcaatgttttctcaacaaaaaccaagatttaatttgatggtagaaaaggtaggt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1310557 aaccaacatttcaaacgaaagaaaagaaatctacacttagaataaatcaatgttttctcaacaaaaaccaagatttaatttgatggtagaaaaggtaggt 1310458  T
Q  416 tctctagaaaggaatagttttggtctaataataatagctatgaaattgtaaagatgaaggaaaagaggttgaaatacttcttacttgtctctttggggtg 515  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1310457 tctctagaaaggaatagttttggtctaataataatagttatgaaattgtaaagatgaaggaaaagaggttgaaatacttcttacttgtctctttggggtg 1310358  T
Q  516 aatgtttgttctatctcttcctccgtcagactccctctccattctctttctctctacgtatttcttgttcgcagaatagaa-tggatgtgtgtgaaaa-g 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |    
T  1310357 aatgtttgttctatctcttcctccgtcagactccctctccattctctttctctctatgtatttcttgttcgcagaatagaagtggatgtgtgtgaaaagg 1310258  T
Q  614 actaggaaccgttattataat 634  Q
    |||||||||||||||||||||    
T  1310257 actaggaaccgttattataat 1310237  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 733 - 774
Target Start/End: Complemental strand, 19932337 - 19932296
Alignment:
Q  733 ctactttcttgctgatcttattatatattactctaataaata 774  Q
    ||||||| ||||| |||||||||||||||||| |||||||||    
T  19932337 ctactttattgctaatcttattatatattactttaataaata 19932296  T

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Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 591 - 741
Target Start/End: Complemental strand, 44667781 - 44667629
Alignment:
Q  591 atagaatggatgtgtgtgaaaa-gactaggaaccg-ttattataataactctctcactaactttcttcctaaaaacgtgggactaaatcatggagtggaa 688  Q
    ||||||||  |||||||||||| || ||||||||| ||||| ||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||    
T  44667781 atagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataactctcccactaactctcttcctaaaaatgtggaactaaatcatggagtggaa 44667682  T
Q  689 agtggggtgtcatgggtatatgaatagggaagaagttgtatttactactttct 741  Q
    ||||| |||||||||  |||| || |||||||||||||||| | |||||||||    
T  44667681 agtggtgtgtcatggtcatataaacagggaagaagttgtatctcctactttct 44667629  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 733 - 810
Target Start/End: Original strand, 5538436 - 5538515
Alignment:
Q  733 ctactttcttgctgatcttattata--tattactctaataaatactagctagtaatatctagtggcacatattcttcgac 810  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  5538436 ctactttcttgctaatcttattatatatattactctaataaatactagctagtaatatctaatggcacatatttttcgac 5538515  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 712
Target Start/End: Complemental strand, 6816978 - 6816851
Alignment:
Q  591 atagaatggatgtgtgtgaaaa-gactaggaaccg-ttattataataactctctcactaactttcttcct----aaaaacgtgggactaaatcatggagt 684  Q
    ||||||||| ||||||| |||| || || |||||| ||||||| |||||||||||||| |||  ||||||    ||||| |||| ||||| |||||||||    
T  6816978 atagaatgggtgtgtgttaaaaagaataagaaccggttattattataactctctcactcactaccttccttgctaaaaatgtggaactaattcatggagt 6816879  T
Q  685 ggaaagtggggtgtcatgggtatatgaa 712  Q
    ||||||||| |||||||||  |||||||    
T  6816878 ggaaagtggtgtgtcatggtcatatgaa 6816851  T

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Target: scaffold0003 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 733 - 810
Target Start/End: Complemental strand, 9041 - 8966
Alignment:
Q  733 ctactttcttgctgatcttattatatattactctaataaatactagctagtaatatctagtggcacatattcttcgac 810  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9041 ctactttcttgctaatcttattatat--tactctaataaatactagctagtaatatctagtggcacatatttttcgac 8966  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 733 - 810
Target Start/End: Complemental strand, 16420329 - 16420254
Alignment:
Q  733 ctactttcttgctgatcttattatatattactctaataaatactagctagtaatatctagtggcacatattcttcgac 810  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16420329 ctactttcttgctaatcttattatat--tactctaataaatactagctagtaatatctagtggcacatatttttcgac 16420254  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 647 - 739
Target Start/End: Complemental strand, 28382816 - 28382724
Alignment:
Q  647 aactttcttcctaaaaacgtgggactaaatcatggagtggaaagtggggtgtcatgggtatatgaatagggaagaagttgtatttactacttt 739  Q
    ||||| ||||||||||  |||| |||||||||||||||||||||||| |||||| ||  ||||||| |||||||||||||||| | |||||||    
T  28382816 aacttccttcctaaaatagtggaactaaatcatggagtggaaagtggtgtgtcacggtcatatgaacagggaagaagttgtatctcctacttt 28382724  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 647 - 741
Target Start/End: Complemental strand, 28387170 - 28387076
Alignment:
Q  647 aactttcttcctaaaaacgtgggactaaatcatggagtggaaagtggggtgtcatgggtatatgaatagggaagaagttgtatttactactttct 741  Q
    ||||| ||||||||||   ||| |||||||||||||||||||||||  |||||| ||  ||||||||| |||||||||||||| |||||||||||    
T  28387170 aacttccttcctaaaataatggaactaaatcatggagtggaaagtgatgtgtcacggtcatatgaataaggaagaagttgtatctactactttct 28387076  T

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Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 591 - 712
Target Start/End: Original strand, 34518754 - 34518880
Alignment:
Q  591 atagaatggatgtgtgtgaaaa-gactaggaaccgttattataataactctctcact----aactttcttcctaaaaacgtgggactaaatcatggagtg 685  Q
    ||||||||| | |||||||||| || ||||||||||||||||||||||||| |||||    ||||| ||| ||||||| |||| ||||||||||||||||    
T  34518754 atagaatgggtatgtgtgaaaaagaataggaaccgttattataataactctttcactcgctaacttccttgctaaaaatgtggaactaaatcatggagtg 34518853  T
Q  686 gaaagtggggtgtcatgggtatatgaa 712  Q
    |||||||| |||||||||  |||||||    
T  34518854 gaaagtggtgtgtcatggtcatatgaa 34518880  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 628 - 741
Target Start/End: Original strand, 28657501 - 28657613
Alignment:
Q  628 ttataataactctctcactaactttcttcctaaaaacgtgggactaaatcatggagtggaaagtggggtgtcatgggtatatgaatagggaagaagttgt 727  Q
    ||||||||||||||||  ||||||  |||||||||| |||| |||||||||||||||||||||||| ||||| |||  ||||||||| |||||||| |||    
T  28657501 ttataataactctctcg-taacttctttcctaaaaaagtggaactaaatcatggagtggaaagtggtgtgtcgtggtcatatgaataaggaagaagctgt 28657599  T
Q  728 atttactactttct 741  Q
    || | |||||||||    
T  28657600 atctcctactttct 28657613  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 641 - 729
Target Start/End: Complemental strand, 2038026 - 2037938
Alignment:
Q  641 ctcactaactttcttcctaaaaacgtgggactaaatcatggagtggaaagtggggtgtcatgggtatatgaatagggaagaagttgtat 729  Q
    ||||||||||| ||| ||||||| |||| |||||||||||| ||||||||||| ||||||||   ||||||| | ||||||||||||||    
T  2038026 ctcactaacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaagttgtat 2037938  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 761 - 803
Target Start/End: Original strand, 37940550 - 37940592
Alignment:
Q  761 tactctaataaatactagctagtaatatctagtggcacatatt 803  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37940550 tactctaataaatactagctagtaatatctagtggcacatatt 37940592  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 761 - 803
Target Start/End: Complemental strand, 18901487 - 18901445
Alignment:
Q  761 tactctaataaatactagctagtaatatctagtggcacatatt 803  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18901487 tactctaataaatactagctagtaatatctagtgtcacatatt 18901445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 733 - 774
Target Start/End: Complemental strand, 18901549 - 18901508
Alignment:
Q  733 ctactttcttgctgatcttattatatattactctaataaata 774  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  18901549 ctactttcttgctaatcttattatatattactttaataaata 18901508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 803
Target Start/End: Original strand, 51784859 - 51784892
Alignment:
Q  770 aaatactagctagtaatatctagtggcacatatt 803  Q
    ||||||||||||||||||||||||||||||||||    
T  51784859 aaatactagctagtaatatctagtggcacatatt 51784892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 774
Target Start/End: Original strand, 51784794 - 51784833
Alignment:
Q  735 actttcttgctgatcttattatatattactctaataaata 774  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  51784794 actttcttgctaatcttattatatattactttaataaata 51784833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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