View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21594_low_10 (Length: 361)
Name: NF21594_low_10
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21594_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 38918394 - 38918679
Alignment:
| Q |
13 |
aatatcgagtagaagtcaagatagatacatacgttgaaatatatcaaataaaatcctaatggtaataagtacatgcatgcagctgtgctgatattaaata |
112 |
Q |
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| T |
38918394 |
aatatcgagtagaagtcaagatagatacatacgttgaaatatatcaaataaaatcctaatggtaattagtacatgcatgcagctgtgctgatattaatta |
38918493 |
T |
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| Q |
113 |
aattatgtaattttctgtgcttccttatgctatagccaaatgttaattatcgtggctaataagaaaacttataaaactggtcaagtctaatctagcacga |
212 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38918494 |
aaatatgtaattttctgtgcttccttatgctatagcctaatgttaattatcgtggctaataagaaaacttataaaactggtcaagtctaatctagcacga |
38918593 |
T |
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| Q |
213 |
aacaataattcaagaattctccaaaacaaaatacacaaatataaagcttacaagaaacctcgaatttaggaattgatttcaatttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38918594 |
aacaataattcaagaattctccaaaacaaaatacacaaatataaagcttacaagaaacctcgaatttaggaattgatttcaatttt |
38918679 |
T |
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