View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21594_low_11 (Length: 342)
Name: NF21594_low_11
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21594_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 10462424 - 10462730
Alignment:
| Q |
18 |
cacagaaagaaaatgaatcatttaatatatttgctaacagtagtaagaggaagaaaaatactatatctttgttatccttcctaggaaataattaatatta |
117 |
Q |
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| T |
10462424 |
cacagaaagaaaatgaatcatttaatatatttgctaacagtagtaagaggaagaaaaatactatatctttgttatccttcctaggaaataattaatatta |
10462523 |
T |
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| Q |
118 |
tcaatatcagacaaatggtaataggtgtagccgatcaggatttaatatcatgtgtgcctaaaaaggtcaaaattacaactccnnnnnnnnnnnnnnnnnn |
217 |
Q |
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| T |
10462524 |
tcaatatcagacaaatggtaataggtgtagccgatcaggatttaatatcatgtgtgcctaaaaaggtcaaaattacaactccaaaatataaataaataaa |
10462623 |
T |
|
| Q |
218 |
nnnnnnggccagcttgcataaatcagggagggagaatacaaaaaactattcttccacatacaaaaaactggacttatcaattttagtgttcggctatatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10462624 |
tatataggccagcttgcataaatcagggagggagaatacaaaaaactattcttccacatacaaaaaactggacttatcaattttagtgttcggctatatg |
10462723 |
T |
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| Q |
318 |
gaattgt |
324 |
Q |
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||||||| |
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| T |
10462724 |
gaattgt |
10462730 |
T |
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