View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21594_low_4 (Length: 448)
Name: NF21594_low_4
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21594_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 31041896 - 31042297
Alignment:
| Q |
19 |
atgaaacacaagtttttgaaattcgtcgagcttgactaattgtaatattcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaacttcttg |
118 |
Q |
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||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31041896 |
atgaagcacaagtttt-gaaattcgttgagcttgactaattgtaat-ttcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaacttcttg |
31041993 |
T |
|
| Q |
119 |
tgccccaaattatacacacgaaaacaaatattatgatatgtatacccacattttaatacctccaaactgacacggtgttttgataattatgctgagttta |
218 |
Q |
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| T |
31041994 |
tgccccaaattatacacacgaaaacaaatattatgatatgtatacccacattttaatacctccaaactgacacggtgttttgataattatgctgagttta |
31042093 |
T |
|
| Q |
219 |
ttgaatatattgagcaaaagtggtatacacacatggttgttccaagaccaattcctgtaagtgaaggaaacggaaattaaaataaactttatgtattatt |
318 |
Q |
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| T |
31042094 |
ttgaatatattgagcaaaagtggtatacacacatgattgttccaagaccaattcttgtaagtgaaggaaacggaaattaaaataaactttatgtattatt |
31042193 |
T |
|
| Q |
319 |
tagtatttacatttgaaaacaaaacctttttcttcatttgaaaagtacttgtggtcaactatttttaaactgatacaaagtcaaaatggtcgtatcatgc |
418 |
Q |
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| T |
31042194 |
tagtatttacattttaaaacaaaacctttttcttcatttgaaaagtacttgtggtcaactatttttaaactgatacaaagtcaaaatggtcgtatcatgc |
31042293 |
T |
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| Q |
419 |
tcaa |
422 |
Q |
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|||| |
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| T |
31042294 |
tcaa |
31042297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 31026898 - 31027012
Alignment:
| Q |
29 |
agtttttgaaattcgtcgagcttgactaattgtaatattcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaacttcttgtgccccaaat |
128 |
Q |
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|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |
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| T |
31026898 |
agtttttgaaattcgtttagtttgactaactgtaatattcttatggtttgaacttgaaa--gttgacaattgaacgaatcaaacttcttgtgcaccaaac |
31026995 |
T |
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| Q |
129 |
tatacacacgaaaacaa |
145 |
Q |
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||||||||||||||||| |
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| T |
31026996 |
tatacacacgaaaacaa |
31027012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 31036723 - 31036844
Alignment:
| Q |
29 |
agtttttgaaattcgtcgagcttgactaattgtaatattcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaacttcttgtgccccaaat |
128 |
Q |
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|||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |
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| T |
31036723 |
agtttttgaaattcgtttagcttgactaattgcaat--tcttatggtttgaacttgaaa--gttgacaattgaacgaatcaaacttcttgtgcaccaaac |
31036818 |
T |
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| Q |
129 |
tatacacacgaaaacaaatattatga |
154 |
Q |
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||||||||||||||||| |||||||| |
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| T |
31036819 |
tatacacacgaaaacaagtattatga |
31036844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 31029753 - 31029865
Alignment:
| Q |
29 |
agtttttgaaattcgtcgagcttgactaattgtaatattcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaacttcttgtgccccaaat |
128 |
Q |
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|||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |
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| T |
31029753 |
agtttttgaaattcgtttagcttgactaattgcaat--tcttatggtttgaacttgaaa--gttgacaattgaacgaatcaaacttcttgtgcaccaaac |
31029848 |
T |
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| Q |
129 |
tatacacacgaaaacaa |
145 |
Q |
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||||||||||||||||| |
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| T |
31029849 |
tatacacacgaaaacaa |
31029865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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