View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21594_low_9 (Length: 372)
Name: NF21594_low_9
Description: NF21594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21594_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 2574733 - 2574388
Alignment:
| Q |
13 |
aatatcacccacatgaatattaggatttggattagatgatgagaaatagttcgattggccatcattgcaacccactttggtctggtgaactttgattgaa |
112 |
Q |
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| T |
2574733 |
aatagcacccacatgaatattaggatttggattagatgatgagaaatagttcgattggccatcattgcaacccactttggtctggtgaactttgattgaa |
2574634 |
T |
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| Q |
113 |
gggatagaagaacctctgtgatgtaattgttttggatatttactcccatatcccaccatatatgacatcttcatgggattgtttcctagtatgtagtcca |
212 |
Q |
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| T |
2574633 |
gggatggaagaacctctgtgatgtaattgttttggatatttactcccatatcccaccatatatgacatcttcatgggattgtttcctagtatgtagtcca |
2574534 |
T |
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| Q |
213 |
cctatgta--atgtacacattcaacttttagtcatgaaccaaaattaagaaaattaataaatgagcttaatatttgtgaagtaaaattagataagtatgt |
310 |
Q |
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| T |
2574533 |
cctatgtaatatgtacacattcaacttttagtcatgaaccaaaattaagaaaattaataaatgagcttaatatttgtgaagtaaaattagataa----gt |
2574438 |
T |
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| Q |
311 |
atatatacctgtaattttgcaaaggctctaatctcagagggtgaaaaatg |
360 |
Q |
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| T |
2574437 |
atatatacctgtaattttgcaaaggctctaatctcagagggtgaaaaatg |
2574388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 2564834 - 2564610
Alignment:
| Q |
18 |
cacccacatgaatattaggatttggattagatgatgagaaatagttcgattggccatcattgcaacccactttggtctggtgaactttgattgaagggat |
117 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564834 |
cacccacatgaatattaggatttggattagaggaatagaaataatctgtgtaaccatcattgcaacccactttggtctggtgaactttgattgaagggat |
2564735 |
T |
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| Q |
118 |
agaagaacctctgtgatgtaattgttttggatatttactcccatatcccaccatatatgacatcttcatgggattgtttcctagtatgtagtccacctat |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2564734 |
ggaagaacctctgtgatgtaattgctttggatatttacttccatatcccaccatgtatgacatcttcatgggattgttacctagtatgtagtccacctat |
2564635 |
T |
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| Q |
218 |
gtaatgtacacattcaacttttagt |
242 |
Q |
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|| |||||||||||||| ||||||| |
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| T |
2564634 |
gttatgtacacattcaatttttagt |
2564610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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