View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21597_low_2 (Length: 383)
Name: NF21597_low_2
Description: NF21597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21597_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 46895094 - 46895455
Alignment:
| Q |
19 |
cctgacacattgttttgagacaattctgaatcagcaagctgtagtttgtattaacacacaac-aagttcaaaaatcaaaataaagggaatgtcataaata |
117 |
Q |
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| T |
46895094 |
cctgacacattgttttgagacaattctgaatcagcaagctgtagtttgtattaacacacaactaagttcaaaaatcaaaatagagggaatgtcataaata |
46895193 |
T |
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| Q |
118 |
agatcgtatacatacgggtacgctagtacgagaaacaagaacatataatcaattatatcaatccgatcgcaattcattaaaattaatagttgtgatatat |
217 |
Q |
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| T |
46895194 |
agatcgtatacatacgggtacgttagtacgagaaacgagaacatataatcaattatatcaatccgatcgcaattcattaaaattaatagttgtgatatat |
46895293 |
T |
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| Q |
218 |
ttttaattaaaagacgtcggtgatctaaaattaatggttttgttgagatctataccatccggtcttgattgaacggtcgca--------------gtgaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| || ||||| |
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| T |
46895294 |
ttttaattaaaagacgtcggtgatctaaaattaatggttttgttgagatctacaccgtccgatcttgattgaacggtcacactgtcattgccgtcgtgaa |
46895393 |
T |
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| Q |
304 |
tgtgttcagtcagtgacgatgtgaaattttggtcaccatatagctctatgccactgtatctt |
365 |
Q |
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| T |
46895394 |
tgtgttcaggcagcgacgacgtgaaatttcggtcaccatatagctctatgccaccgtatctt |
46895455 |
T |
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