View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21598_low_1 (Length: 709)

Name: NF21598_low_1
Description: NF21598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21598_low_1
NF21598_low_1
[»] chr8 (22 HSPs)
chr8 (13-593)||(6262074-6262654)
chr8 (142-455)||(6456117-6456430)
chr8 (172-515)||(6449680-6450023)
chr8 (172-272)||(6362116-6362216)
chr8 (172-232)||(6368891-6368951)
chr8 (172-232)||(7457972-7458032)
chr8 (172-232)||(7470374-7470434)
chr8 (121-232)||(6273391-6273502)
chr8 (172-258)||(6330783-6330869)
chr8 (178-232)||(6389879-6389933)
chr8 (121-227)||(6423097-6423203)
chr8 (172-227)||(6351231-6351286)
chr8 (181-332)||(6409131-6409282)
chr8 (172-258)||(6320321-6320407)
chr8 (403-479)||(6390101-6390177)
chr8 (178-232)||(6287699-6287753)
chr8 (403-521)||(6331014-6331132)
chr8 (403-464)||(6320552-6320613)
chr8 (403-489)||(6273673-6273759)
chr8 (403-521)||(6351462-6351580)
chr8 (403-491)||(6369119-6369207)
chr8 (300-332)||(6389998-6390030)
[»] chr2 (3 HSPs)
chr2 (121-463)||(42692108-42692450)
chr2 (121-336)||(42689525-42689740)
chr2 (388-503)||(42689358-42689473)
[»] chr5 (2 HSPs)
chr5 (144-516)||(9605992-9606364)
chr5 (181-337)||(9590525-9590681)
[»] chr1 (1 HSPs)
chr1 (172-461)||(36926126-36926415)
[»] chr7 (1 HSPs)
chr7 (121-347)||(46709125-46709351)
[»] chr3 (1 HSPs)
chr3 (394-455)||(36745682-36745743)


Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 13 - 593
Target Start/End: Original strand, 6262074 - 6262654
Alignment:
Q  13 attatactcagtagtacctgcaatatgtaaaatatttgattttagtcgcgataaaataaatatcatttgatatgaacaaattttgcagagactaaaacaa 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262074 attatactcggtagtacctgcaatatgtaaaatatttgattttagtcgcgataaaataaatatcatttgatatgaacaaattttgcagagactaaaacaa 6262173  T
Q  113 aacacgtacctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262174 aacacgtacctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaag 6262273  T
Q  213 agctgaagcagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgaccc 312  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262274 agctgaagcagtccatatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgaccc 6262373  T
Q  313 acttctacaacttctttccaccaagattgcagttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtct 412  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262374 acttctacaacttctttccaccaagattggagttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtct 6262473  T
Q  413 taatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaactgctattcc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262474 taatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaactgctattcc 6262573  T
Q  513 tctaaataaacaagagcacaataattatacgggttaaatatattgttagtccttataaaatcatgatcattcaactttaat 593  Q
     |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6262574 cctaaataaacaagatcacaataattatactggttaaatatattgttagtccttataaaatcatgatcgttcaactttaat 6262654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 142 - 455
Target Start/End: Original strand, 6456117 - 6456430
Alignment:
Q  142 ctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgc 241  Q
    |||||||||||||||||||| |  ||  | |||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||   ||    
T  6456117 ctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagc 6456216  T
Q  242 aaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaagattg 341  Q
    ||  ||||| ||| ||| |   ||||||||| || ||||||||||||| |||||||  |||||||||||||  ||||||| |||| |||||||||| |||    
T  6456217 aagattgaaccaagtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccatgacccttttctacagcttccttccaccaagtttg 6456316  T
Q  342 cagttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatca 441  Q
     ||||||| |||||  || | |  |||||||| ||   | |||| |||||| |||||||| ||||||| ||||||||||||||| || || |||||||||    
T  6456317 tagttcagtgtccttttgcactacttcatctgttggataatataaggagacatagtcttgaacccatgccttaatagcatcccatatttctagtccatca 6456416  T
Q  442 acagcataagggta 455  Q
    ||||||||||||||    
T  6456417 acagcataagggta 6456430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 172 - 515
Target Start/End: Original strand, 6449680 - 6450023
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgca 271  Q
    ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||   ||||  ||||| ||| ||||    ||||||||    
T  6449680 cctccgtaaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataatggagcaagattgaaccaagtcttgaacagtttgca 6449779  T
Q  272 ttttcggccaccatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaagattgcagttcagagtcctgctgaattttttcatc 371  Q
    | || ||||||||||||| |||||||  |||||| ||||||  ||||||| |||| ||||||||   ||| | ||||| ||| |  || |     |||||    
T  6449780 tcttaggccaccatggcttgtctttcaagtcaccgtgacccttttctacagcttccttccaccatttttgaatttcagtgtctttttgcaccgcctcatc 6449879  T
Q  372 tgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtaga 471  Q
    || ||   |||||| |||||| |||||||| ||||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||||| |  ||     
T  6449880 tgttggatagtataaggagacatagtcttggacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaagt 6449979  T
Q  472 cgaagaccgtgaggggaagatgaatccgcaactgctattcctct 515  Q
    ||||| |||||||||||||| | |||| |||| |||| ||||||    
T  6449980 cgaaggccgtgaggggaagagggatcctcaacagctaatcctct 6450023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 6362116 - 6362216
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgca 271  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||   |  ||||| ||| ||||||||| || ||||||||||    
T  6362116 cctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatatgagggtggtgcaagcttcaatcaactcctcacgagtttgca 6362215  T
Q  272 t 272  Q
    |    
T  6362216 t 6362216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 6368891 - 6368951
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 232  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  6368891 cctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6368951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 7457972 - 7458032
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 232  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  7457972 cctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 7458032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 7470374 - 7470434
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 232  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  7470374 cctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 7470434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 6273391 - 6273502
Alignment:
Q  121 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 220  Q
    ||||||| |||||||||||  || ||   |||||| ||||| |  ||| |||| || ||||||||||||||||||||||||||||||||||| |||||||    
T  6273391 cctttcttaggcattaatcttctgcttttagttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaag 6273490  T
Q  221 cagtccagatga 232  Q
    || |||| ||||    
T  6273491 caatccatatga 6273502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 6330783 - 6330869
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactct 258  Q
    |||||||| |||||||| ||||||||||||||||||||| | ||||||||| |||| ||||  ||| ||||| ||| ||||||||||    
T  6330783 cctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagcttcaatcaactct 6330869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 6389879 - 6389933
Alignment:
Q  178 tacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 232  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  6389879 tacggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6389933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 6423097 - 6423203
Alignment:
Q  121 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 220  Q
    |||||||||||||| |||| ||| ||   |||||| ||||| |  ||| | |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  6423097 cctttctcaggcatgaatctcctgctcttagttggtcggttaaggatgtatcctccatatgggtattgtccaaaattaacagctgcatgaagtgctgaag 6423196  T
Q  221 cagtcca 227  Q
    || ||||    
T  6423197 caatcca 6423203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 6351231 - 6351286
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtcca 227  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  6351231 cctccatatggatattgtccgaaattaacagctgcatgaagtgctgaagcaatcca 6351286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 6409131 - 6409282
Alignment:
Q  181 ggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggcc 280  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| ||||   |  |||||  || |||||||||| | ||||||| ||| ||   ||    
T  6409131 ggatattgtccaaaattaacagctgcatgaagtgctgaagccatccaaatgagggtggtgcaagtttcaatcaactctgcacgagttttcatcttaaacc 6409230  T
Q  281 accatggctcgtctttcttgtcaccatgacccacttctacaacttctttcca 332  Q
    ||||||   | || |||  ||||||||| ||||||||||||| |||||||||    
T  6409231 accatgttgcatccttcaagtcaccatggcccacttctacaagttctttcca 6409282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 6320321 - 6320407
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactct 258  Q
    |||||||| || ||||| ||||||||||||||||||||| | ||||||||| |||| ||||  ||| ||||| ||| ||||||||||    
T  6320321 cctccatatgggtattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagcttcaatcaactct 6320407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 479
Target Start/End: Original strand, 6390101 - 6390177
Alignment:
Q  403 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagacc 479  Q
    ||||||| |||||||||| |||| || || ||||||||||||||||| || ||||||||||| || ||||| |||||    
T  6390101 acccatgacttaatagcagcccatatctctagtccatcaacagcatatggataatcctctatcagaagacgcagacc 6390177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 6287699 - 6287753
Alignment:
Q  178 tacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 232  Q
    |||||||||||||||||||||||||| |||||||| || |||||| |||| ||||    
T  6287699 tacggatattgtccaaaattaacagccgcatgaagtgccgaagcaatccatatga 6287753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 6331014 - 6331132
Alignment:
Q  403 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaa 502  Q
    ||||||| ||| ||||||||||| || || ||||||||| ||||||||||||| |||||||| || || ||||  || || ||||||| || |||| |||    
T  6331014 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6331113  T
Q  503 ctgctattcctctaaataa 521  Q
    | || | ||||||| ||||    
T  6331114 cagccactcctctagataa 6331132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 6320552 - 6320613
Alignment:
Q  403 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctat 464  Q
    ||||||| ||| ||||||||||| || || ||||||||| ||||||||||||| ||||||||    
T  6320552 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctat 6320613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 6273673 - 6273759
Alignment:
Q  403 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaa 489  Q
    ||||||| ||||||| || |||| || || | ||||||| ||||||||||||| |||||||| || || ||||| ||||| ||||||    
T  6273673 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtggggaa 6273759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 6351462 - 6351580
Alignment:
Q  403 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaa 502  Q
    ||||||| |||||| ||| |||| || || |||||||||  ||||||||| ||||||||||| || || || ||||||  ||| || | || |||| |||    
T  6351462 acccatgacttaatggcagcccatatttctagtccatcagaagcataaggataatcctctatcagaaggcggagaccggtaggagaggctggatcctcaa 6351561  T
Q  503 ctgctattcctctaaataa 521  Q
    | |||| ||||||||||||    
T  6351562 cagctactcctctaaataa 6351580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 491
Target Start/End: Original strand, 6369119 - 6369207
Alignment:
Q  403 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaaga 491  Q
    ||||||| |||||||||| |||| || || ||||||||   |||||| || ||||||||||| || ||||| ||||| || ||||||||    
T  6369119 acccatgacttaatagcagcccatatctctagtccatctgaagcatatggataatcctctatcagaagacgcagaccatgtggggaaga 6369207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 6389998 - 6390030
Alignment:
Q  300 gtcaccatgacccacttctacaacttctttcca 332  Q
    ||||||||||||||||||||||| |||||||||    
T  6389998 gtcaccatgacccacttctacaagttctttcca 6390030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 8e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 121 - 463
Target Start/End: Original strand, 42692108 - 42692450
Alignment:
Q  121 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 220  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||||||||    
T  42692108 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcatgaagagctgaag 42692207  T
Q  221 cagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctac 320  Q
    || |||| |||| | || |||||||||  |  | |||||| |||| |||||| || |||||||||||||||| |||||| ||||| ||||| || |||||    
T  42692208 caatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctac 42692307  T
Q  321 aacttctttccaccaagattgcagttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagca 420  Q
     | |||||||||||||| ||| |||||||| || ||   || | | |||||||  ||| |||| | |||||| |||||||| ||||||||||| || |||    
T  42692308 gagttctttccaccaagcttggagttcagaatcttgtctaagtatgtcatctgtggtgtagtacaaggagacatagtcttgaacccatgtctttattgca 42692407  T
Q  421 tcccaaatgtcaagtccatcaacagcataagggtaatcctcta 463  Q
     |||| || || | |||||||  ||||||||||||||||||||    
T  42692408 gcccatatctctaatccatcatgagcataagggtaatcctcta 42692450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 121 - 336
Target Start/End: Complemental strand, 42689740 - 42689525
Alignment:
Q  121 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 220  Q
    |||| |||||| | |||||  ||||| | |||||| |||||||  || ||||| || || |||||||||||||||||||||||||| || || |||||||    
T  42689740 ccttcctcaggaagtaatcttctactgatagttgggcggtttagaataaaaccgccgtaaggatattgtccaaaattaacagctgcgtggagggctgaag 42689641  T
Q  221 cagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctac 320  Q
    | ||||| ||||| ||| ||||| ||| ||  | ||||||  | |||||||  || ||||||||||||| |||||||   |||||||||||    |||||    
T  42689640 ccgtccatatgatgatagtgcaagcttcaacaagctcttcaagtgtttgcaacttgggccaccatggcttgtctttcaaatcaccatgacctttctctac 42689541  T
Q  321 aacttctttccaccaa 336  Q
    ||||||||||||||||    
T  42689540 aacttctttccaccaa 42689525  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 388 - 503
Target Start/End: Complemental strand, 42689473 - 42689358
Alignment:
Q  388 gagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgagggg 487  Q
    ||||| || |||||||||||||| |||||||    ||| || || | ||||||||||||||||||||| |||||||| || |||||||| ||||  ||||    
T  42689473 gagacataatcttgtacccatgttttaatagttgtccatatctctaatccatcaacagcataagggtagtcctctatcagaagacgaagtccgtatgggg 42689374  T
Q  488 aagatgaatccgcaac 503  Q
    | |||| |||| ||||    
T  42689373 acgatggatcctcaac 42689358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 144 - 516
Target Start/End: Complemental strand, 9606364 - 9605992
Alignment:
Q  144 actaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaa 243  Q
    |||||| |||||||||||||  ||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    ||     
T  9606364 actaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatggaacat 9606265  T
Q  244 acttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaagattgca 343  Q
      ||| || || ||||    | ||||||| || ||||||||||||| |||||||  ||||||||||||   |||||||||||| |||||||||| ||| |    
T  9606264 gattggattaaatcttgaatattttgcatcttaggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgta 9606165  T
Q  344 gttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaac 443  Q
     ||||| ||| |  || | |   |||||   ||   | || | ||| || |||||||| ||||||| ||||||||||||||| || || |||||||||||    
T  9606164 attcagtgtctttttgtactgcctcatcatttggataatacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaac 9606065  T
Q  444 agcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaactgctattcctcta 516  Q
     ||||||||||| ||||| || |  |||||||| || || || || |||| |||| |||| |||| |||||||    
T  9606064 tgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaacggctaatcctcta 9605992  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 181 - 337
Target Start/End: Complemental strand, 9590681 - 9590525
Alignment:
Q  181 ggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggcc 280  Q
    |||||||||||||| |||||||| ||||||||||| | || |||||| ||||||||    |||  ||||||||  ||||   ||||||||||  | ||||    
T  9590681 ggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatcaggtcttgaagagtttgcatgctaggcc 9590582  T
Q  281 accatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaag 337  Q
    ||||| ||| ||||||   |||||||||||||  |||||||||||| || |||||||    
T  9590581 accattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaag 9590525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 172 - 461
Target Start/End: Complemental strand, 36926415 - 36926126
Alignment:
Q  172 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgca 271  Q
    |||||||| ||||| |||||||| || || || ||||| |||||||||||| |||| || |||||| |||||  || ||||| ||||||| |||| ||||    
T  36926415 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagctcttcgagagtatgca 36926316  T
Q  272 ttttcggccaccatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaagattgcagttcagagtcctgctgaattttttcatc 371  Q
    | || |||||||| ||||| ||||||||||||||||||||| ||||    | ||| |||||||||||||| ||||| ||||| | ||  |||   || ||    
T  36926315 tctttggccaccaaggctcatctttcttgtcaccatgaccctcttcccttatttccttccaccaagattgaagttccgagtctttcttgattgagtcctc 36926216  T
Q  372 tgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc 461  Q
         || |||| ||||||  ||||||||  ||||||||||| || |||  |||||| || ||||||||||| |||||||||||||||||    
T  36926215 atccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctc 36926126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 347
Target Start/End: Original strand, 46709125 - 46709351
Alignment:
Q  121 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 220  Q
    |||||||||||||| ||||| | ||| |  ||||||||||||  |  | ||||| || | |||||||||||||| || ||||||||||| ||||||||||    
T  46709125 cctttctcaggcatgaatcggcgacttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaag 46709224  T
Q  221 cagtccagatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctac 320  Q
    || |||| || || ||  ||||   ||   ||||||||||    |||||||| || |||||||| ||||||| ||||||||| || |||||  ||| ||     
T  46709225 caatccatataatgattgtgcatgtttccgtcaactcttccactgtttgcatctttggccaccaaggctcgtttttcttgtcgccgtgaccttcttgtat 46709324  T
Q  321 aacttctttccaccaagattgcagttc 347  Q
     | ||| |||||||||||||| |||||    
T  46709325 caattccttccaccaagattgtagttc 46709351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 36745743 - 36745682
Alignment:
Q  394 tagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggta 455  Q
    |||||||  ||||||| ||||||||||||||| || || | ||||||||||||| |||||||    
T  36745743 tagtctttcacccatgccttaatagcatcccatatctctaatccatcaacagcaaaagggta 36745682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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