View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21598_low_2 (Length: 328)

Name: NF21598_low_2
Description: NF21598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21598_low_2
NF21598_low_2
[»] chr7 (28 HSPs)
chr7 (21-295)||(41957697-41957971)
chr7 (17-298)||(1804873-1805154)
chr7 (83-295)||(10552700-10552912)
chr7 (30-203)||(45414352-45414524)
chr7 (160-298)||(42014518-42014655)
chr7 (187-298)||(45075209-45075320)
chr7 (17-89)||(2393299-2393371)
chr7 (239-298)||(42013599-42013658)
chr7 (233-298)||(3615333-3615398)
chr7 (220-298)||(40792956-40793034)
chr7 (17-86)||(11409494-11409563)
chr7 (183-296)||(31592326-31592439)
chr7 (187-298)||(6272449-6272559)
chr7 (17-83)||(31592547-31592614)
chr7 (219-298)||(10555072-10555151)
chr7 (17-83)||(17733875-17733942)
chr7 (253-298)||(2204019-2204064)
chr7 (117-202)||(13953995-13954079)
chr7 (219-272)||(34192008-34192061)
chr7 (236-272)||(3614408-3614444)
chr7 (243-290)||(5569351-5569398)
chr7 (115-158)||(13953368-13953411)
chr7 (244-298)||(39881342-39881396)
chr7 (195-285)||(46526065-46526155)
chr7 (17-81)||(13953271-13953336)
chr7 (253-298)||(17185160-17185205)
chr7 (233-298)||(31594320-31594385)
chr7 (249-298)||(43349577-43349626)
[»] chr3 (26 HSPs)
chr3 (17-298)||(52560283-52560564)
chr3 (187-298)||(18942601-18942712)
chr3 (187-298)||(45035076-45035187)
chr3 (187-290)||(48165223-48165326)
chr3 (236-294)||(18946561-18946619)
chr3 (219-298)||(13931-14010)
chr3 (240-298)||(45031514-45031572)
chr3 (183-298)||(18912223-18912338)
chr3 (243-298)||(38108773-38108828)
chr3 (236-298)||(51014292-51014354)
chr3 (187-296)||(18878733-18878844)
chr3 (226-298)||(55146563-55146635)
chr3 (236-298)||(30715875-30715937)
chr3 (219-298)||(55151327-55151406)
chr3 (17-86)||(53562306-53562375)
chr3 (253-298)||(10036827-10036872)
chr3 (19-82)||(18878953-18879017)
chr3 (17-79)||(18946342-18946405)
chr3 (219-298)||(32428768-32428847)
chr3 (17-79)||(45031673-45031736)
chr3 (17-63)||(4950706-4950752)
chr3 (226-298)||(33942735-33942807)
chr3 (253-298)||(34470242-34470287)
chr3 (17-81)||(37222605-37222670)
chr3 (253-298)||(45266536-45266581)
chr3 (25-81)||(47867744-47867801)
[»] chr5 (10 HSPs)
chr5 (160-290)||(34393988-34394118)
chr5 (219-298)||(34394182-34394261)
chr5 (17-81)||(7250246-7250311)
chr5 (238-298)||(10825307-10825367)
chr5 (236-289)||(9042457-9042510)
chr5 (243-298)||(19870453-19870508)
chr5 (253-298)||(1696715-1696759)
chr5 (253-298)||(7263380-7263425)
chr5 (253-298)||(8214319-8214364)
chr5 (253-298)||(22965776-22965821)
[»] scaffold0916 (1 HSPs)
scaffold0916 (17-158)||(352-494)
[»] chr1 (14 HSPs)
chr1 (187-296)||(18239454-18239563)
chr1 (17-83)||(18239657-18239724)
chr1 (220-298)||(42463202-42463280)
chr1 (17-102)||(46200982-46201068)
chr1 (17-86)||(13706297-13706367)
chr1 (219-298)||(50915336-50915415)
chr1 (253-298)||(17684491-17684536)
chr1 (253-298)||(39855427-39855472)
chr1 (250-298)||(4911555-4911603)
chr1 (219-267)||(18243432-18243480)
chr1 (235-298)||(27105628-27105691)
chr1 (227-298)||(38047443-38047514)
chr1 (253-298)||(12792326-12792371)
chr1 (221-298)||(31387954-31388031)
[»] chr6 (5 HSPs)
chr6 (187-298)||(5620723-5620834)
chr6 (236-298)||(5613796-5613858)
chr6 (194-298)||(31860683-31860787)
chr6 (187-298)||(29268350-29268461)
chr6 (187-264)||(29230602-29230679)
[»] chr8 (13 HSPs)
chr8 (187-298)||(40494047-40494158)
chr8 (183-298)||(41270266-41270381)
chr8 (17-86)||(20495339-20495409)
chr8 (187-298)||(20495501-20495611)
chr8 (236-296)||(8037301-8037361)
chr8 (219-267)||(20477209-20477257)
chr8 (23-83)||(21551557-21551617)
chr8 (23-83)||(21552603-21552663)
chr8 (238-298)||(42095412-42095472)
chr8 (17-86)||(23718511-23718581)
chr8 (187-298)||(45120692-45120803)
chr8 (253-298)||(33074862-33074907)
chr8 (253-298)||(42167151-42167196)
[»] chr2 (16 HSPs)
chr2 (240-296)||(44070750-44070806)
chr2 (236-305)||(19507792-19507861)
chr2 (187-295)||(26394144-26394252)
chr2 (219-298)||(28654700-28654779)
chr2 (17-81)||(19508015-19508080)
chr2 (253-298)||(22712221-22712266)
chr2 (219-298)||(31500781-31500860)
chr2 (17-86)||(2121090-2121160)
chr2 (253-298)||(6978812-6978857)
chr2 (197-294)||(19508967-19509063)
chr2 (17-66)||(34457167-34457216)
chr2 (219-298)||(2119446-2119525)
chr2 (17-64)||(26170621-26170668)
chr2 (253-298)||(10602229-10602274)
chr2 (253-298)||(23719309-23719354)
chr2 (253-298)||(24106981-24107026)
[»] chr4 (12 HSPs)
chr4 (187-298)||(12024502-12024613)
chr4 (240-298)||(9981108-9981166)
chr4 (236-298)||(22438594-22438656)
chr4 (17-81)||(12028154-12028219)
chr4 (17-83)||(54604003-54604070)
chr4 (253-298)||(10466541-10466586)
chr4 (226-298)||(22436038-22436110)
chr4 (241-298)||(39388411-39388468)
chr4 (253-298)||(40729236-40729281)
chr4 (253-298)||(52073508-52073553)
chr4 (250-298)||(205263-205311)
chr4 (233-265)||(2333838-2333870)
[»] scaffold0184 (2 HSPs)
scaffold0184 (198-268)||(28628-28698)
scaffold0184 (17-86)||(28453-28523)
[»] scaffold0078 (2 HSPs)
scaffold0078 (198-268)||(44146-44216)
scaffold0078 (17-86)||(44321-44391)
[»] scaffold0251 (1 HSPs)
scaffold0251 (17-83)||(1861-1928)
[»] scaffold1903 (1 HSPs)
scaffold1903 (240-290)||(285-335)
[»] scaffold0688 (1 HSPs)
scaffold0688 (236-298)||(5932-5994)
[»] scaffold1043 (1 HSPs)
scaffold1043 (249-298)||(2605-2654)
[»] scaffold1813 (1 HSPs)
scaffold1813 (17-86)||(663-733)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 41957971 - 41957697
Alignment:
Q  21 acttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaacactgtaac 120  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41957971 acttgtgatttacttgaagaaattaggacgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaacactgtaac 41957872  T
Q  121 tagaaaatggaggtttctgcgttcatatcataaacattagaacaacagttagctaccactgagtgtcagcggctgttaactgctggcgtatcattgagcg 220  Q
     ||||||||||||||| |||||||||||||||||||||||||| |||||||  |||| ||||||| |||||| |||||||||  ||||||||||||||||    
T  41957871 cagaaaatggaggtttatgcgttcatatcataaacattagaacgacagttaagtaccgctgagtgccagcgggtgttaactgtcggcgtatcattgagcg 41957772  T
Q  221 gttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaat 295  Q
    |||| |||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  41957771 gttgttaactgccgttgggggcatttacgtattttacgtgtgtcaataggaaggtttcattgtcaaaaaagcaat 41957697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 1804873 - 1805154
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaacactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1804873 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaacactg 1804972  T
Q  117 taactagaaaatggaggtttctgcgttcatatcataaacattagaacaacagttagctaccactgagtgtcagcggctgttaactgctggcgtatcattg 216  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||  ||||||| ||| | || ||||||   ||||||||||||    
T  1804973 taactagaaaatggaggtttctgcgttcatatcatatacattagaacgacagttaactactgctgagtgccagtgacttttaactatcggcgtatcattg 1805072  T
Q  217 agcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||| ||||||| | | | || |||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  1805073 agcggtttgtaactgccatcgaggacatttacgtattttacttgtgtcaataggaagatttcattgtcaaaaaagcattttt 1805154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 83 - 295
Target Start/End: Complemental strand, 10552912 - 10552700
Alignment:
Q  83 gattgaaaatgaaaatgttttgcatgtaacactgtaactagaaaatggaggtttctgcgttcatatcataaacattagaacaacagttagctaccactga 182  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  10552912 gattgaaaatgaaaatgttttgcatgtaacactataaccagaaaatggtggtttctgcgttcatatcataaacattagaacgacagttaactaccgctga 10552813  T
Q  183 gtgtcagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattg 282  Q
    ||||| | ||||||||||||| || ||||||||||||||||| |||||  || ||| | | |||  |||  |||||||||||||||||||   |||  ||    
T  10552812 gtgtcggtggctgttaactgccggtgtatcattgagcggttgttaactaccgctggagactttttagtaaattacttgtgtcaataggaagtattccatg 10552713  T
Q  283 tcaaaaaagcaat 295  Q
    |||||||||||||    
T  10552712 tcaaaaaagcaat 10552700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 45414524 - 45414352
Alignment:
Q  30 ttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaacactgtaactagaaaatg 129  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  45414524 ttacttgaagaaataaggatgattttcgagcaaatgagatttgggtgattttagattgaaaatgaaagtgttttgcatgtaacactgtaaccagaaaatg 45414425  T
Q  130 gaggtttctgcgttcatatcataaacattagaacaacagttagctaccactgagtgtcagcggctgttaactgc 203  Q
    ||||||||| |||||||||||||||||||  |||  ||||||  |||| |||| || ||||||| |||||||||    
T  45414424 gaggtttctacgttcatatcataaacattgcaacggcagttaattaccgctga-tgccagcggcagttaactgc 45414352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 42014518 - 42014655
Alignment:
Q  160 gaacaacagttagctaccactgagtgtcagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttactt 259  Q
    |||| ||||||| || |||||| ||| || ||| |||||| ||  ||||||||||||| | |||| |||||| |  ||||||||||||||||||||||||    
T  42014518 gaacgacagttaactgccactg-gtgccaacggttgttaaatgtcggcgtatcattgaacagttgttaactgccactgggggcatttacgtattttactt 42014616  T
Q  260 gtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||| ||| ||||||||||| ||||||||||||    
T  42014617 gtgtcaatagaaatttttcattgtcagaaaagcaatttt 42014655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 45075320 - 45075209
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||| ||||  |||||||||| ||||||||| |||||| || |||||||||||  ||||||||||||||||||||||||  |||||||||||     
T  45075320 cagcggttgttcactgacggcgtatcatagagcggttgttaactgccgctgggggcattttagtattttacttgtgtcaataggaagttttcattgtcag 45075221  T
Q  287 aaaagcaatttt 298  Q
    |||| |||||||    
T  45075220 aaaaacaatttt 45075209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 2393299 - 2393371
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaa 89  Q
    |||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||| |||||||    
T  2393299 acttacttgtgatttacttgaacaaattagcatgatttttgtgcaaatgaggtttgggtgatttttgattgaa 2393371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 42013658 - 42013599
Alignment:
Q  239 gggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  42013658 gggcatttacgtattttacttgtgtcaataggaagatttcattgtcaaaaaagcaatttt 42013599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 3615333 - 3615398
Alignment:
Q  233 cgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||    
T  3615333 cgttgggggcatttacgtattttatttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 3615398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 40793034 - 40792956
Alignment:
Q  220 ggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||| |||||| || |||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||| ||||||    
T  40793034 ggttgttaactgccgctgggggcatttacgtattttacttgtgtcaatgggaaaatttcattgtaaaaaaaggaatttt 40792956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 11409494 - 11409563
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggatt 86  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| | | | |||||||||||||||||    
T  11409494 acttacttgtgatttacttgaagaagttaggatgattttcgtgcaatttaagattgggtgattttggatt 11409563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 296
Target Start/End: Complemental strand, 31592439 - 31592326
Alignment:
Q  183 gtgtcagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaatag-gaatgtttcatt 281  Q
    |||| ||||| | |||||||| | ||||||||||||||||||  || ||||||| |||||||||  |||||||||||||||||||||  ||| ||||  |    
T  31592439 gtgttagcggttattaactgccgacgtatcattgagcggttgtgaattgtcgtt-ggggcattttagtattttacttgtgtcaatagaaaatttttctat 31592341  T
Q  282 gtcaaaaaagcaatt 296  Q
    |||||||||||||||    
T  31592340 gtcaaaaaagcaatt 31592326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 6272559 - 6272449
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||||||| |||||| ||||||||||||| |||| | ||   |||||||||  |||||||| ||||||||||| |||  ||||||||| |     
T  6272559 cagcgggtgttaactgcaggcgtaacattgagcggttgttaacggccg-caggggcattttagtattttatttgtgtcaatatgaagttttcattgttag 6272461  T
Q  287 aaaagcaatttt 298  Q
    ||||||||||||    
T  6272460 aaaagcaatttt 6272449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 31592614 - 31592547
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 83  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||| |||||||||||| |||||    
T  31592614 acttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaggtttgggtgaatttgg 31592547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 10555072 - 10555151
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| |||||| |||||||| |||||| |||||||||||||||||||  |||  | ||| ||||| ||||||||||||    
T  10555072 cggttgttaactgccgttggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaatttt 10555151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 17733875 - 17733942
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 83  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||| | |||||||||| |||||    
T  17733875 acttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaagtttgggtgaatttgg 17733942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 2204064 - 2204019
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||||||||||    
T  2204064 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 2204019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 13953995 - 13954079
Alignment:
Q  117 taactagaaaatggaggtttctgcgttcatatcataaacattagaacaacagttagctaccactgagtgtcagcggctgttaactg 202  Q
    |||| ||||||||||||||||||  |||||||||||||||||  |||  |||||| ||||| ||||| | ||||||| ||||||||    
T  13953995 taaccagaaaatggaggtttctgttttcatatcataaacattgcaacggcagttaactaccgctgag-gccagcggcagttaactg 13954079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 34192061 - 34192008
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaa 272  Q
    |||||| |||||| |||||| ||||||||||||||||| |||||||||| ||||    
T  34192061 cggttgttaactgccgttggaggcatttacgtattttatttgtgtcaattggaa 34192008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 3614444 - 3614408
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaa 272  Q
    |||||||||||||||||||||||||||| ||||||||    
T  3614444 tgggggcatttacgtattttacttgtgttaataggaa 3614408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 5569351 - 5569398
Alignment:
Q  243 atttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaa 290  Q
    ||||||||||||||||||||||||||||||   |||||||| ||||||    
T  5569351 atttacgtattttacttgtgtcaataggaactattcattgtaaaaaaa 5569398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 13953368 - 13953411
Alignment:
Q  115 tgtaactagaaaatggaggtttctgcgttcatatcataaacatt 158  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||    
T  13953368 tgtaaccagaaaatggaggtttatgctttcatatcataaacatt 13953411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 39881396 - 39881342
Alignment:
Q  244 tttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||||||| ||||| ||||||||  ||||||||||| |||| |||||||    
T  39881396 tttacgtattttacatgtgttaataggaagttttcattgtcagaaaaacaatttt 39881342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 46526155 - 46526065
Alignment:
Q  195 gttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtca 285  Q
    ||||||||| | |||| ||||||||||||| |||| | || ||| | |||||  |||||||||||||||| ||| |||  |||||||||||    
T  46526155 gttaactgccgccgtaacattgagcggttgttaacggccgctggagacattttagtattttacttgtgtcgatatgaagttttcattgtca 46526065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 13953271 - 13953336
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 81  Q
    |||||||||||| ||| |||| |||||| |  ||||||||||||||| ||| ||||||||||||||    
T  13953271 acttacttgtgaattaattgatgaaatttgattgattttcgagcaaattgaagtttgggtgatttt 13953336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 17185160 - 17185205
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   ||||||||| |||||||||||||    
T  17185160 tttacttgtgtcaataggaagtattcattgtcgaaaaagcaatttt 17185205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 31594320 - 31594385
Alignment:
Q  233 cgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||| |||||| ||||||||||||||||||| ||||  ||||| | ||| |||| |||||||    
T  31594320 cgttggggacatttatgtattttacttgtgtcaattggaacttttcaatatcagaaaaacaatttt 31594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 43349626 - 43349577
Alignment:
Q  249 gtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||| ||  || | |||||||||||||||||||    
T  43349626 gtattttacttgtgtcaatagaaactttcctttgtcaaaaaagcaatttt 43349577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 52560564 - 52560283
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaacactg 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  52560564 acttacttgtgatttacttgatgaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaacatta 52560465  T
Q  117 taactagaaaatggaggtttctgcgttcatatcataaacattagaacaacagttagctaccactgagtgtcagcggctgttaactgctggcgtatcattg 216  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||  |||||| ||||||||||||||||| ||||||||||||    
T  52560464 taaccagaaaatggaggtttctgcgttcatatcatataaattagaacgacagttaactaccgttgagtgccagcggctgttaactgccggcgtatcattg 52560365  T
Q  217 agcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||| || |||||| || ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52560364 agcgggtgttaactgccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgtcaaaaaagcaatttt 52560283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 18942712 - 18942601
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| ||||||||||||||||||||||||||  ||| |||| | |||| ||||||||| |||||||||||||||||||||||||  |||||||||||     
T  18942712 cagcggttgttaactgctggcgtatcattgagcttttgttaacggccgttaggggcatttgcgtattttacttgtgtcaataggaaattttcattgtcag 18942613  T
Q  287 aaaagcaatttt 298  Q
    |||| |||||||    
T  18942612 aaaaacaatttt 18942601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 45035076 - 45035187
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||||||  ||||||||||||| |||||| ||| || || ||||| |||||||||||||||||||||||||||||||  ||||||||| |     
T  45035076 cagcggttgttaactgtcggcgtatcattgaacggttgttaattgccgctggggacatttacgtattttacttgtgtcaataggaagttttcattgttag 45035175  T
Q  287 aaaagcaatttt 298  Q
    ||||| ||||||    
T  45035176 aaaagtaatttt 45035187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 48165223 - 48165326
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||||||  |||  |||||| | |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||  ||||||||||||    
T  48165223 cagcggttgttaactgtcggccaatcatttaacggttgttaactgccgttggaggcatttacgtattttacttatgtcaataggaagatttcattgtcaa 48165322  T
Q  287 aaaa 290  Q
    ||||    
T  48165323 aaaa 48165326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 18946561 - 18946619
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaa 294  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  18946561 tgggggcatttacgtattttacttgtgtcaataggaaggtttcatcgtcaaaaaagcaa 18946619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 13931 - 14010
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| |||||| || ||| |||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  13931 cggttgttaactgccgctggaggcattaacatattttacttgtgtcaataggaaagtttcattgttaaaaaagcaatttt 14010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 45031572 - 45031514
Alignment:
Q  240 ggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  45031572 ggcatttacgtattttatttgtgtcaataggaagatttcattgtcaaaaaagcaatttt 45031514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 298
Target Start/End: Original strand, 18912223 - 18912338
Alignment:
Q  183 gtgtcagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattg 282  Q
    |||||||||| ||||||||   | |||| ||||||||||| | |||| | || ||| |||||||  |||||||||||||||||||| |||  ||||| ||    
T  18912223 gtgtcagcggttgttaactatcgacgtaacattgagcggtagttaacggccgctggaggcattttagtattttacttgtgtcaatatgaaattttcactg 18912322  T
Q  283 tcaaaaaagcaatttt 298  Q
    ||| ||||||||||||    
T  18912323 tcagaaaagcaatttt 18912338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 38108828 - 38108773
Alignment:
Q  243 atttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  38108828 atttaagtattttacttgtgtcaataggaactttttattgtcaaaaaagcaatttt 38108773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 51014292 - 51014354
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||||| ||||||||||||||||||| ||||  ||||| ||||| ||||||||||||    
T  51014292 tgggggcatttaggtattttacttgtgtcaattggaacttttcaatgtcagaaaagcaatttt 51014354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 18878844 - 18878733
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcattt--acgtattttacttgtgtcaataggaatgtttcattgtc 284  Q
    |||||| |||||||||| ||||||||||||||||| || |||||| || | |||| ||||    |||||||||||| |||||||||||  ||||  | ||    
T  18878844 cagcggatgttaactgccggcgtatcattgagcgggtgttaactgccgctaggggtattttggtgtattttacttgcgtcaataggaagttttctatatc 18878745  T
Q  285 aaaaaagcaatt 296  Q
    ||||||||||||    
T  18878744 aaaaaagcaatt 18878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 55146635 - 55146563
Alignment:
Q  226 taactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||| |||||||||| ||||| |||||||| |||||||||||||||  || | || ||||||||||||||||    
T  55146635 taactatcgttgggggtatttatgtattttaattgtgtcaataggaactttcctttttcaaaaaagcaatttt 55146563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 30715937 - 30715875
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttca-ttgtcaaaaaagcaatttt 298  Q
    |||||| ||||| ||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  30715937 tgggggtatttatgtattttacttgtgtcaataggaa-ctttcatttgtcaaaaaagcaatttt 30715875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 55151327 - 55151406
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| |||||| || |||| ||||||| ||||||||| ||||||||| ||||  ||||| ||||| ||||||||||||    
T  55151327 cggttgttaactgccgctgggagcatttaggtattttacctgtgtcaattggaacttttcaatgtcagaaaagcaatttt 55151406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 53562306 - 53562375
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatga-ggtttgggtgattttggatt 86  Q
    |||||||||| |||||||||||| || | |||||||||||| | |||||| ||||||||||||||||||||    
T  53562306 acttacttgt-atttacttgaagcaaattggatgattttcgtgtaaatgaaggtttgggtgattttggatt 53562375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 10036872 - 10036827
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||||||||||    
T  10036872 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 10036827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 18879017 - 18878953
Alignment:
Q  19 ttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttg 82  Q
    ||||||||||||||||||||| || | |||| ||||||| ||||||| |||||||||||| ||||    
T  18879017 ttacttgtgatttacttgaagcaaattggataattttcgtgcaaatgaaggtttgggtgaatttg 18878953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 18946342 - 18946405
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatt 79  Q
    |||||||||||| ||| |||| |||||| | |||||||||||||||| ||| ||||||||||||    
T  18946342 acttacttgtgaattaattgatgaaatttgaatgattttcgagcaaattgaagtttgggtgatt 18946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 32428768 - 32428847
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| ||||||||| |||||||| ||| |||  |||||| ||||||||||||  ||||  ||||| ||||||||||||    
T  32428768 cggttgttaactgtcgctgggggcaattatgtaaattacttatgtcaataggaagttttctatgtcagaaaagcaatttt 32428847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 45031736 - 45031673
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatt 79  Q
    |||||||||||| ||| |||| |||||| | |||||||||||||||| ||| ||||||||||||    
T  45031736 acttacttgtgaattaattgatgaaatttgaatgattttcgagcaaattgaagtttgggtgatt 45031673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 4950706 - 4950752
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaa 63  Q
    ||||||||||||||||||||||| || | |||||||||||| |||||    
T  4950706 acttacttgtgatttacttgaagcaaattggatgattttcgtgcaaa 4950752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 33942735 - 33942807
Alignment:
Q  226 taactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcat-tgtcaaaaaagcaatttt 298  Q
    |||||| ||||||||||| ||| |||  ||||||||||||||||||| ||||| | ||||| ||||||||||||    
T  33942735 taactgccgttgggggcaattatgtaaattacttgtgtcaataggaa-gtttcctatgtcacaaaagcaatttt 33942807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 34470287 - 34470242
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||| ||||||    
T  34470287 tttacttgtgtcaataggaagtattcattgtcaaaaaagaaatttt 34470242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 37222605 - 37222670
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 81  Q
    |||| ||||| | ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  37222605 actttcttgtaaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 37222670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 45266536 - 45266581
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||| ||||||||||||||||||    
T  45266536 tttacttgtgtcaataggaaatattcaatgtcaaaaaagcaatttt 45266581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 47867801 - 47867744
Alignment:
Q  25 gtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 81  Q
    |||| ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  47867801 gtgaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 47867744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 34394118 - 34393988
Alignment:
Q  160 gaacaacagttagctaccactgagtgtcagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttactt 259  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||| || ||| ||||||||||||||||||||    
T  34394118 gaacgacagttaactaccgctgagtgtcagcggctgttaactgccggcatatcattgagcggttgttaactgccgctggaggcatttacgtattttactt 34394019  T
Q  260 gtgtcaataggaatgtttcattgtcaaaaaa 290  Q
    |||||||||  ||||||||||||| ||||||    
T  34394018 gtgtcaataaaaatgtttcattgtaaaaaaa 34393988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 34394182 - 34394261
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| ||||||||| ||||| |||||   ||||||||||||||||||| |||  ||||||||||| ||||||||||||    
T  34394182 cggttgttaactgtcgctggggacattttattattttacttgtgtcaatatgaagttttcattgtcagaaaagcaatttt 34394261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 7250311 - 7250246
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 81  Q
    |||||||||||| ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  7250311 acttacttgtgaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 7250246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 10825367 - 10825307
Alignment:
Q  238 ggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||  |||||||||||||||||||| |||  ||||||||||| ||||||||||||    
T  10825367 ggggcattttagtattttacttgtgtcaatatgaagttttcattgtcataaaagcaatttt 10825307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 9042457 - 9042510
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaa 289  Q
    |||||| |||||  |||||||||||||| |||||||| ||||||||||||||||    
T  9042457 tgggggtatttaaatattttacttgtgttaataggaaggtttcattgtcaaaaa 9042510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 19870508 - 19870453
Alignment:
Q  243 atttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||| ||||||||||||||||||||| ||  || | |||||||||||||||||||    
T  19870508 atttaagtattttacttgtgtcaatagtaactttcctttgtcaaaaaagcaatttt 19870453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 1696715 - 1696759
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||||    
T  1696715 tttacttgtgtcaataggaa-gtttcaatgtcagaaaagcaatttt 1696759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 7263380 - 7263425
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||||||| |||||  ||||||||||| ||||||||||||    
T  7263380 tttacttgtgtcaaaaggaagttttcattgtcagaaaagcaatttt 7263425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 8214319 - 8214364
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||| ||||||||||||||||||    
T  8214319 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaatttt 8214364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 22965776 - 22965821
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||| ||||||||||||||||||    
T  22965776 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaatttt 22965821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 494 - 352
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaac--ac 114  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||||||||||  ||    
T  494 acttacttgtgacttacttgaagaaattaggatgattttcaagcaaatgaggattgggtgattttggattgaaaatggaagtgttttgcatgtaacgtac 395  T
Q  115 tgtaactagaaaatggaggtttctgcgttcatatcataaacatt 158  Q
    | ||||  || | |||| |||||||| |||||||||||||||||    
T  394 tataacccgatactgga-gtttctgcattcatatcataaacatt 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 18239563 - 18239454
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||||||| |||||||||||||||||||| |||||| ||||||||| ||||  ||||||||||||||||||||||||  ||||  ||||||    
T  18239563 cagcggttgttaactgccggcgtatcattgagcggttgttaactgccgttgggggtattttagtattttacttgtgtcaataggaagttttctatgtcaa 18239464  T
Q  287 aaaagcaatt 296  Q
    ||||||||||    
T  18239463 aaaagcaatt 18239454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 18239724 - 18239657
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 83  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||| |||||||||||| |||||    
T  18239724 acttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaggtttgggtgaatttgg 18239657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 42463280 - 42463202
Alignment:
Q  220 ggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||| |||||||||||||||| ||||  |||||||| || |||||||| |||  ||||||||||| ||||||||||||    
T  42463280 ggttgttaactgtcgttgggggtattttagtattttaattatgtcaatatgaagttttcattgtcagaaaagcaatttt 42463202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 46200982 - 46201068
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggattgaaaatgaaaatgttt 102  Q
    ||||||||||||||||||||| | || | |||||||||||| ||||||| |||||| ||||| ||| |||| ||| |||||||||||    
T  46200982 acttacttgtgatttacttgaggcaaattggatgattttcgtgcaaatgaaggttttggtgaattttgattaaaattgaaaatgttt 46201068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 13706367 - 13706297
Alignment:
Q  17 acttacttgtgatttacttgaag-aaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 86  Q
    |||||||| |||||||||||||| ||||||| |||||||||| ||||||| |||||||| ||||||||||||    
T  13706367 acttacttatgatttacttgaagcaaattag-atgattttcgtgcaaatgaaggtttggatgattttggatt 13706297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 50915336 - 50915415
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| |||||| || ||| ||| |||| ||||||||||||||||||| ||||  ||||| ||||| ||||||||||||    
T  50915336 cggttgttaactgccgctggaggcttttaggtattttacttgtgtcaattggaacttttcaatgtcagaaaagcaatttt 50915415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 17684536 - 17684491
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||||||||||    
T  17684536 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 17684491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 39855472 - 39855427
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||||||||||    
T  39855472 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 39855427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 4911603 - 4911555
Alignment:
Q  250 tattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||| |||  |||||||||||||||| |||||||    
T  4911603 tattttacttgtgtcaatatgaagttttcattgtcaaaaaaacaatttt 4911555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 18243432 - 18243480
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaat 267  Q
    |||||| |||||| || |||||||||||| |||||||||||||||||||    
T  18243432 cggttgttaactgccgctgggggcatttatgtattttacttgtgtcaat 18243480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 27105691 - 27105628
Alignment:
Q  235 ttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| |||||  |||||||||||||||||||| |||  ||||||||||| |||| |||||||    
T  27105691 ttggggacattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaaacaatttt 27105628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 38047443 - 38047514
Alignment:
Q  227 aactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||| || |||||| ||||| ||||||||||||||||||| | ||  ||||| ||||| ||||||||||||    
T  38047443 aactgccgctgggggtatttaggtattttacttgtgtcaattgaaacttttcaatgtcagaaaagcaatttt 38047514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 12792326 - 12792371
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||| ||||||   |||||||||||||||||||||||    
T  12792326 tttacttgtgtcagtaggaagtattcattgtcaaaaaagcaatttt 12792371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 31387954 - 31388031
Alignment:
Q  221 gttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||| |||||| || ||| |||||||  ||||||||||| |||||||| |||  ||||||| ||| ||||||||||||    
T  31387954 gttgttaactgccgctggaggcattttagtattttacttatgtcaatatgaaattttcattatcataaaagcaatttt 31388031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 5620723 - 5620834
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||||||| | ||||||||||| |||||| |||||| || |||||||||||||||| ||||||||||||||||||||  |||||||||||     
T  5620723 cagcggttgttaactgccgacgtatcattgaacggttgttaactgccgctgggggcatttacgtagtttacttgtgtcaataggaagttttcattgtcag 5620822  T
Q  287 aaaagcaatttt 298  Q
    |||| |||||||    
T  5620823 aaaaacaatttt 5620834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 5613858 - 5613796
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| ||||| |||||||||||| |||||||||||  || | |||||||||||||||||||    
T  5613858 tgggggtatttaagtattttacttgggtcaataggaactttcctttgtcaaaaaagcaatttt 5613796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 31860683 - 31860787
Alignment:
Q  194 tgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagca 293  Q
    |||||||||| || |||| |||||||||||| |||||| || |||||||| ||| ||  ||||||||||||| |  |||  ||||  ||||| |||||||    
T  31860683 tgttaactgccggagtattattgagcggttgttaactgccgctgggggcaattatgtcatttacttgtgtcattgtgaagttttctatgtcagaaaagca 31860782  T
Q  294 atttt 298  Q
    |||||    
T  31860783 atttt 31860787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 29268350 - 29268461
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||||||| |||||||  |||| |||||| |||||| || ||| |||||  ||||||||| |||| |||  || |||  ||||  ||||||    
T  29268350 cagcggttgttaactgccggcgtattcttgaacggttgttaactgccgctggaggcataaacgtatttttcttgcgtcgttatgaacttttctatgtcaa 29268449  T
Q  287 aaaagcaatttt 298  Q
    ||||||||||||    
T  29268450 aaaagcaatttt 29268461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 29230679 - 29230602
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtc 264  Q
    |||||| |||||| ||| |||||||  |||| ||| || |||||| || |||||||||  ||||||||||||||||||    
T  29230679 cagcggttgttaattgccggcgtattcttgaacggctgttaactgccgctgggggcataaacgtattttacttgtgtc 29230602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 40494047 - 40494158
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||||||||||||| ||||||| | |||| ||||||||| |||||  ||||| ||||||||||||||||||||||||  |||||||||||     
T  40494047 cagcggttgttaactgctggcgtctcattgaacagttgttaactgtcgatggggatatttaagtattttacttgtgtcaataggaagttttcattgtcag 40494146  T
Q  287 aaaagcaatttt 298  Q
    |||| |||||||    
T  40494147 aaaatcaatttt 40494158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 298
Target Start/End: Original strand, 41270266 - 41270381
Alignment:
Q  183 gtgtcagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattg 282  Q
    ||||||| || |||||||||  ||||||||||  |||||||| ||||||||| | | ||||||||||||||||||||||||||||| |||  ||||| ||    
T  41270266 gtgtcagtggttgttaactgtcggcgtatcatgaagcggttgttaactgtcgctagaggcatttacgtattttacttgtgtcaatatgaaattttcactg 41270365  T
Q  283 tcaaaaaagcaatttt 298  Q
    ||||||||||||||||    
T  41270366 tcaaaaaagcaatttt 41270381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 20495339 - 20495409
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 86  Q
    |||||||||||||||| |||||  || | |||||||||||| ||||||| |||||||||||||||||||||    
T  20495339 acttacttgtgatttagttgaatcaaattggatgattttcgtgcaaatgaaggtttgggtgattttggatt 20495409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 20495501 - 20495611
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||||||  |||||||||||||||  ||| |||||| ||  ||| |||| |  |||||||||||||||||||| |||  ||||  ||||||    
T  20495501 cagcggttgttaactgtcggcgtatcattgagcaattgttaactgccgc-gggagcatgttagtattttacttgtgtcaatacgaagttttctatgtcaa 20495599  T
Q  287 aaaagcaatttt 298  Q
    ||||||||||||    
T  20495600 aaaagcaatttt 20495611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 8037301 - 8037361
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatt 296  Q
    ||||| |||||| |||||||||||||||||||  ||| |||||||||| |||||| |||||    
T  8037301 tggggacatttatgtattttacttgtgtcaatgtgaaggtttcattgtaaaaaaaacaatt 8037361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 20477257 - 20477209
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaat 267  Q
    |||||| |||||| || |||||||||||| |||||||||||||||||||    
T  20477257 cggttgttaactgccgctgggggcatttaggtattttacttgtgtcaat 20477209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 21551557 - 21551617
Alignment:
Q  23 ttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttgg 83  Q
    |||||||||||||||||||||||||||| || ||| |||||  | | ||||||||||||||    
T  21551557 ttgtgatttacttgaagaaattaggatgcttgtcgtgcaaaatatgcttgggtgattttgg 21551617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 21552603 - 21552663
Alignment:
Q  23 ttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttgg 83  Q
    |||||||||||||||||||||||||||| || ||| |||||  | | ||||||||||||||    
T  21552603 ttgtgatttacttgaagaaattaggatgcttgtcgtgcaaaatatgcttgggtgattttgg 21552663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 42095472 - 42095412
Alignment:
Q  238 ggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||  ||||||||||||||||||||| ||  ||||||||||| |||| |||||||    
T  42095472 ggggcattttagtattttacttgtgtcaatagaaaattttcattgtcataaaatcaatttt 42095412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 23718511 - 23718581
Alignment:
Q  17 acttacttgtgatttacttgaag-aaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 86  Q
    ||||| ||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||| | ||||||||    
T  23718511 acttatttgtgatttacttgaagcaaatta-gatgattttcgtgcaaatgaaggtttgggtaaatttggatt 23718581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 45120692 - 45120803
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||||||||||||| |||||||| ||||| ||  || |||||| || ||||| || ||| ||| ||||||||||||| |  |||  ||||  |||||     
T  45120692 cagcggctgttaactgttggcgtattattgaacgactgttaactgccgctggggacaattaagtaatttacttgtgtcattgtgaacttttctatgtcag 45120791  T
Q  287 aaaagcaatttt 298  Q
    ||||||||||||    
T  45120792 aaaagcaatttt 45120803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 33074862 - 33074907
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||||||||| |||   |||||||||||||||||||||||    
T  33074862 tttacttgtgtcaatatgaaatattcattgtcaaaaaagcaatttt 33074907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 42167196 - 42167151
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   ||||||||||||||| |||||||    
T  42167196 tttacttgtgtcaataggaagtattcattgtcaaaaaaccaatttt 42167151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 44070806 - 44070750
Alignment:
Q  240 ggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44070806 ggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatt 44070750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 19507861 - 19507792
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaattttgttcatt 305  Q
    ||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||| ||||||    
T  19507861 tgggggcatttacgtattttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcttcatt 19507792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 26394144 - 26394252
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| ||||||||||||||||||| | ||||||||| ||| || || |  ||||| ||  ||| ||||||||||||||||| ||  |||||||||||     
T  26394144 cagcggttgttaactgctggcgtatcttggagcggttgttaattgccgctatgggcaattgagtaatttacttgtgtcaatagaaagttttcattgtcag 26394243  T
Q  287 aaaagcaat 295  Q
    |||||||||    
T  26394244 aaaagcaat 26394252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 28654700 - 28654779
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| |||||| || |||||||||||  ||||||||||||||||||||| || |||||||||| | |||| |||||||    
T  28654700 cggttgttaactgccgctgggggcatttcagtattttacttgtgtcaatagaaaggtttcattgttagaaaaacaatttt 28654779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 19508080 - 19508015
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 81  Q
    |||||||||||| ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  19508080 acttacttgtgaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 19508015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 22712221 - 22712266
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  22712221 tttacttgtgtcaataggaattattcattgtcaaaaaagcaatttt 22712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 31500860 - 31500781
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| |||||| || ||  |||||||  |||||||||||||||||||| |||  ||||||||||| ||||||||||||    
T  31500860 cggttgttaactgccgctgaaggcattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaagcaatttt 31500781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 2121090 - 2121160
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 86  Q
    ||||||||||||||| ||||||| || | |||||||||||| ||||||| |||||||| ||||||| ||||    
T  2121090 acttacttgtgatttccttgaagcaaattggatgattttcgtgcaaatgaaggtttggatgattttagatt 2121160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 6978812 - 6978857
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||||||||||    
T  6978812 tttacttgtgtcaataggaaatattcattgtcaaaaaagcaatttt 6978857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 19508967 - 19509063
Alignment:
Q  197 taactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaa 294  Q
    ||||||| ||||||||||| |||||||| |||||| || || |  |||||  ||||||||||||||||||||||||  ||| || |||| ||||||||    
T  19508967 taactgccggcgtatcattaagcggttgttaactgccgatgaga-cattttagtattttacttgtgtcaataggaagtttttatcgtcataaaagcaa 19509063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 34457216 - 34457167
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatga 66  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||    
T  34457216 acttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatga 34457167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 2119525 - 2119446
Alignment:
Q  219 cggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| |||||| || |||| ||||||   ||||||||||||||||||| |||  ||||||||||| |||| |||||||    
T  2119525 cggttgttaactgccgctgggagcatttcaatattttacttgtgtcaatatgaagttttcattgtcagaaaatcaatttt 2119446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 26170668 - 26170621
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaat 64  Q
    |||||||||||| ||| |||| |||||| |||||||||||||||||||    
T  26170668 acttacttgtgagttaattgatgaaatttggatgattttcgagcaaat 26170621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 10602229 - 10602274
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||| ||||||||||||||||||    
T  10602229 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaatttt 10602274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 23719354 - 23719309
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||| ||||||    
T  23719354 tttacttgtgtcaataggaagtattcattgtcaaaaaaggaatttt 23719309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 24107026 - 24106981
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||| ||||||    
T  24107026 tttacttgtgtcaataggaagtattcattgtcaaaaaaggaatttt 24106981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 12024613 - 12024502
Alignment:
Q  187 cagcggctgttaactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaa 286  Q
    |||||| |||||| ||| |||||||||| ||| || || ||||||||| |||||||| ||  ||| ||||||||||||||||||||  |||||||||||     
T  12024613 cagcgggtgttaattgccggcgtatcatggagtgggtgttaactgtcgctgggggcaattgggtaatttacttgtgtcaataggaagttttcattgtcag 12024514  T
Q  287 aaaagcaatttt 298  Q
    |||| |||||||    
T  12024513 aaaatcaatttt 12024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 9981166 - 9981108
Alignment:
Q  240 ggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||    
T  9981166 ggcatttacgtattttacttgtgtcaataggaagtattccttgtcaaaaaagcaatttt 9981108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 22438594 - 22438656
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| ||||| ||||||||||||||||||||||||  || | |||||||||||||||||||    
T  22438594 tgggggtatttatgtattttacttgtgtcaataggaacattcctttgtcaaaaaagcaatttt 22438656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 12028154 - 12028219
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 81  Q
    |||||||||||| ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  12028154 acttacttgtgaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 12028219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 54604003 - 54604070
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 83  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||| | |||||||||| |||||    
T  54604003 acttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaatgtttgggtgaatttgg 54604070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 10466586 - 10466541
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   |||||||||||||||||||||||    
T  10466586 tttacttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 10466541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 22436110 - 22436038
Alignment:
Q  226 taactgtcgttgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||||| || ||| |||||||| |||||||||||||||| || ||||  ||||| ||||| ||||||||||||    
T  22436110 taactgccgctggaggcatttaagtattttacttgtgtcgattggaacttttcaatgtcagaaaagcaatttt 22436038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 39388468 - 39388411
Alignment:
Q  241 gcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||| ||| ||||||||||||||| ||||  ||||| ||| ||||||||||||||    
T  39388468 gcatttaagtaatttacttgtgtcaattggaacttttcaatgttaaaaaagcaatttt 39388411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 40729281 - 40729236
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   ||||||||||||||| |||||||    
T  40729281 tttacttgtgtcaataggaaatattcattgtcaaaaaatcaatttt 40729236  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 52073553 - 52073508
Alignment:
Q  253 tttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||   ||||||||||||||| |||||||    
T  52073553 tttacttgtgtcaataggaaatattcattgtcaaaaaaacaatttt 52073508  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 205263 - 205311
Alignment:
Q  250 tattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||| |||||||||||||||   |||||||| ||||||||||||||    
T  205263 tattttatttgtgtcaataggaaatattcattgtgaaaaaagcaatttt 205311  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 2333838 - 2333870
Alignment:
Q  233 cgttgggggcatttacgtattttacttgtgtca 265  Q
    ||||||||||||||| |||||||||||||||||    
T  2333838 cgttgggggcatttaagtattttacttgtgtca 2333870  T

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Target: scaffold0184 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 28628 - 28698
Alignment:
Q  198 aactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaata 268  Q
    |||||| ||||||||||||||||| || |||||| |||| |||||||||  ||||||||||||||||||||    
T  28628 aactgccggcgtatcattgagcggctgttaactgccgttaggggcattttagtattttacttgtgtcaata 28698  T

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Target: scaffold0184; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 28453 - 28523
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 86  Q
    |||||||||||||||| |||||| || | |||||||||||| | ||||| |||||||||||||||||||||    
T  28453 acttacttgtgatttagttgaagcaaattggatgattttcgtggaaatgaaggtttgggtgattttggatt 28523  T

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Target: scaffold0078 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 44216 - 44146
Alignment:
Q  198 aactgctggcgtatcattgagcggttggtaactgtcgttgggggcatttacgtattttacttgtgtcaata 268  Q
    |||||| ||||||||||||||||| || |||||| |||| |||||||||  ||||||||||||||||||||    
T  44216 aactgccggcgtatcattgagcggctgttaactgccgttaggggcattttagtattttacttgtgtcaata 44146  T

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Target: scaffold0078; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 44391 - 44321
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 86  Q
    |||||||||||||||| |||||| || | |||||||||||| | ||||| |||||||||||||||||||||    
T  44391 acttacttgtgatttagttgaagcaaattggatgattttcgtggaaatgaaggtttgggtgattttggatt 44321  T

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Target: scaffold0251 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 1861 - 1928
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 83  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||| |||||||||||| |||||    
T  1861 acttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaggtttgggtgaatttgg 1928  T

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Target: scaffold1903 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 335 - 285
Alignment:
Q  240 ggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaa 290  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  335 ggcatttacgtattttacttgtgtcaataagaagtattcattgtcaaaaaa 285  T

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Target: scaffold0688 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 5932 - 5994
Alignment:
Q  236 tgggggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    |||| ||||||||||||||||||||||||||| | ||  ||||| ||||| ||||||||||||    
T  5932 tgggagcatttacgtattttacttgtgtcaattgaaacttttcaatgtcagaaaagcaatttt 5994  T

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Target: scaffold1043 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 2654 - 2605
Alignment:
Q  249 gtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatttt 298  Q
    ||||||||||||||||||||||||  | ||||||||| ||||||||||||    
T  2654 gtattttacttgtgtcaataggaagttgtcattgtcagaaaagcaatttt 2605  T

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Target: scaffold1813 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 663 - 733
Alignment:
Q  17 acttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 86  Q
    |||||||||| | |||||||||| || | |||||||||||| ||||||| ||||||| | |||||||||||    
T  663 acttacttgttaattacttgaagcaaattggatgattttcgtgcaaatgaaggtttgagggattttggatt 733  T

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