View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21599_low_1 (Length: 943)

Name: NF21599_low_1
Description: NF21599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21599_low_1
NF21599_low_1
[»] chr4 (26 HSPs)
chr4 (399-943)||(50112128-50112662)
chr4 (20-287)||(50112728-50112995)
chr4 (100-254)||(50111333-50111487)
chr4 (288-406)||(50113056-50113174)
chr4 (843-943)||(50077909-50078009)
chr4 (843-943)||(49106939-49107039)
chr4 (20-80)||(13494251-13494311)
chr4 (20-76)||(23222619-23222675)
chr4 (20-92)||(6328304-6328378)
chr4 (20-92)||(388191-388263)
chr4 (20-80)||(14604347-14604407)
chr4 (20-92)||(32385421-32385493)
chr4 (20-92)||(41947625-41947697)
chr4 (20-55)||(29890179-29890214)
chr4 (20-82)||(10555167-10555229)
chr4 (188-254)||(23669908-23669974)
chr4 (20-82)||(26740288-26740350)
chr4 (20-82)||(29290182-29290244)
chr4 (20-82)||(37670064-37670126)
chr4 (20-82)||(43587813-43587875)
chr4 (212-254)||(50111277-50111319)
chr4 (20-82)||(52920655-52920717)
chr4 (20-82)||(56038487-56038549)
chr4 (20-81)||(16833676-16833737)
chr4 (20-81)||(20540325-20540386)
chr4 (20-77)||(53988333-53988390)
[»] chr8 (40 HSPs)
chr8 (399-841)||(44250055-44250495)
chr8 (100-254)||(22011994-22012144)
chr8 (634-765)||(44249964-44250094)
chr8 (100-254)||(21961584-21961734)
chr8 (100-254)||(21960994-21961144)
chr8 (100-254)||(21961420-21961570)
chr8 (100-254)||(21960830-21960980)
chr8 (100-254)||(21961158-21961308)
chr8 (622-765)||(44253555-44253692)
chr8 (28-100)||(44250569-44250641)
chr8 (100-184)||(21960732-21960816)
chr8 (186-254)||(21961748-21961816)
chr8 (186-254)||(22013368-22013436)
chr8 (186-254)||(21961322-21961390)
chr8 (100-169)||(22011911-22011980)
chr8 (188-254)||(19735339-19735405)
chr8 (20-92)||(14762489-14762561)
chr8 (20-82)||(30597119-30597181)
chr8 (20-89)||(11587823-11587892)
chr8 (100-140)||(21962540-21962580)
chr8 (20-82)||(600122-600184)
chr8 (20-82)||(4631010-4631072)
chr8 (20-89)||(14809942-14810011)
chr8 (28-92)||(3562339-3562403)
chr8 (20-92)||(6010175-6010247)
chr8 (20-92)||(27919487-27919559)
chr8 (36-92)||(34865788-34865844)
chr8 (35-82)||(2099040-2099087)
chr8 (37-80)||(9268084-9268127)
chr8 (463-502)||(13284256-13284295)
chr8 (20-82)||(11714586-11714648)
chr8 (20-82)||(16872431-16872493)
chr8 (20-82)||(24616662-24616724)
chr8 (20-82)||(30526305-30526367)
chr8 (20-82)||(32629664-32629726)
chr8 (20-82)||(37505103-37505165)
chr8 (20-82)||(42192296-42192358)
chr8 (20-82)||(42981341-42981403)
chr8 (20-89)||(12000640-12000709)
chr8 (20-89)||(35544057-35544126)
[»] chr2 (28 HSPs)
chr2 (100-254)||(21502893-21503043)
chr2 (186-254)||(21503057-21503125)
chr2 (20-82)||(5748529-5748591)
chr2 (20-82)||(27183201-27183263)
chr2 (20-82)||(27832743-27832805)
chr2 (848-914)||(43849695-43849761)
chr2 (20-92)||(10197880-10197952)
chr2 (20-92)||(15848773-15848845)
chr2 (20-92)||(18449991-18450063)
chr2 (20-82)||(5421582-5421644)
chr2 (20-82)||(8341552-8341614)
chr2 (20-92)||(1684196-1684268)
chr2 (20-92)||(5274502-5274574)
chr2 (20-92)||(12363768-12363840)
chr2 (20-92)||(40649199-40649271)
chr2 (27-82)||(4826446-4826501)
chr2 (20-55)||(37742789-37742824)
chr2 (20-82)||(1205060-1205122)
chr2 (20-82)||(9047310-9047372)
chr2 (20-82)||(12467777-12467839)
chr2 (20-82)||(27245034-27245096)
chr2 (20-82)||(27341659-27341721)
chr2 (20-82)||(29843733-29843795)
chr2 (20-82)||(36602099-36602161)
chr2 (20-82)||(42056184-42056246)
chr2 (20-89)||(22061127-22061196)
chr2 (20-81)||(39407924-39407985)
chr2 (20-81)||(40833616-40833677)
[»] scaffold0015 (9 HSPs)
scaffold0015 (100-254)||(208003-208153)
scaffold0015 (100-254)||(208167-208317)
scaffold0015 (100-254)||(208429-208579)
scaffold0015 (186-254)||(207921-207989)
scaffold0015 (113-184)||(212045-212116)
scaffold0015 (186-254)||(208347-208415)
scaffold0015 (100-160)||(208593-208653)
scaffold0015 (100-140)||(207157-207197)
scaffold0015 (20-92)||(20604-20676)
[»] chr5 (22 HSPs)
chr5 (115-254)||(17424502-17424637)
chr5 (36-91)||(4911456-4911511)
chr5 (20-82)||(6335090-6335152)
chr5 (20-82)||(6517481-6517543)
chr5 (20-82)||(22801758-22801820)
chr5 (20-89)||(4890012-4890081)
chr5 (20-80)||(2123745-2123805)
chr5 (20-79)||(39932958-39933017)
chr5 (20-82)||(2606492-2606554)
chr5 (20-82)||(27187284-27187346)
chr5 (20-82)||(27293370-27293432)
chr5 (20-82)||(31196125-31196187)
chr5 (20-82)||(34381893-34381955)
chr5 (20-82)||(35870078-35870140)
chr5 (20-82)||(36347278-36347340)
chr5 (20-82)||(39895871-39895933)
chr5 (20-74)||(40029619-40029673)
chr5 (20-82)||(42940914-42940976)
chr5 (20-89)||(4456541-4456610)
chr5 (36-81)||(10601902-10601947)
chr5 (20-89)||(35080414-35080483)
chr5 (20-81)||(40275253-40275314)
[»] scaffold0314 (3 HSPs)
scaffold0314 (105-232)||(19462-19585)
scaffold0314 (100-204)||(19587-19687)
scaffold0314 (164-254)||(19701-19787)
[»] chr6 (26 HSPs)
chr6 (843-943)||(10796319-10796419)
chr6 (142-240)||(29907848-29907942)
chr6 (20-80)||(21047322-21047382)
chr6 (20-81)||(17360747-17360808)
chr6 (20-92)||(7885162-7885234)
chr6 (20-84)||(15989658-15989722)
chr6 (20-80)||(21072042-21072102)
chr6 (20-92)||(25509857-25509929)
chr6 (20-92)||(30240354-30240426)
chr6 (36-92)||(30510816-30510872)
chr6 (20-92)||(33841383-33841455)
chr6 (142-238)||(29906402-29906494)
chr6 (142-238)||(30117886-30117978)
chr6 (20-82)||(8201608-8201670)
chr6 (20-82)||(9660297-9660359)
chr6 (20-82)||(12499542-12499604)
chr6 (20-82)||(12506871-12506933)
chr6 (20-82)||(12509297-12509359)
chr6 (20-82)||(13631134-13631196)
chr6 (20-82)||(14310838-14310900)
chr6 (20-82)||(30739223-30739285)
chr6 (20-82)||(31949212-31949274)
chr6 (20-81)||(4981209-4981270)
chr6 (20-89)||(12278491-12278560)
chr6 (20-89)||(19098667-19098735)
chr6 (20-89)||(26409195-26409264)
[»] chr3 (25 HSPs)
chr3 (154-254)||(32772823-32772923)
chr3 (20-82)||(49384325-49384387)
chr3 (20-92)||(20394053-20394125)
chr3 (20-92)||(30767751-30767823)
chr3 (20-82)||(51166354-51166416)
chr3 (20-82)||(52915171-52915233)
chr3 (20-89)||(30745000-30745069)
chr3 (20-95)||(34344502-34344575)
chr3 (20-82)||(3645777-3645839)
chr3 (20-82)||(8104378-8104440)
chr3 (20-82)||(19960897-19960959)
chr3 (20-82)||(25903980-25904042)
chr3 (20-82)||(27848757-27848819)
chr3 (20-82)||(29343350-29343412)
chr3 (20-82)||(36669296-36669358)
chr3 (20-82)||(47054144-47054206)
chr3 (20-82)||(52040321-52040383)
chr3 (20-82)||(52679659-52679721)
chr3 (20-82)||(53655038-53655100)
chr3 (20-89)||(23782213-23782282)
chr3 (20-89)||(29227235-29227304)
chr3 (20-89)||(38999592-38999661)
chr3 (19-76)||(49615444-49615501)
chr3 (20-81)||(54747782-54747843)
chr3 (463-496)||(55395321-55395354)
[»] chr1 (23 HSPs)
chr1 (186-254)||(52071043-52071111)
chr1 (102-179)||(52071127-52071204)
chr1 (20-95)||(39501831-39501906)
chr1 (20-82)||(27952754-27952816)
chr1 (142-240)||(2363421-2363515)
chr1 (20-81)||(44789416-44789477)
chr1 (20-92)||(26551533-26551605)
chr1 (20-92)||(52177931-52178003)
chr1 (20-82)||(5653559-5653621)
chr1 (20-82)||(8711949-8712011)
chr1 (20-82)||(11353708-11353770)
chr1 (20-82)||(13985340-13985402)
chr1 (20-82)||(14203080-14203142)
chr1 (20-82)||(24589646-24589708)
chr1 (22-52)||(30093746-30093776)
chr1 (20-82)||(34967402-34967464)
chr1 (20-82)||(38816996-38817058)
chr1 (20-82)||(44343715-44343777)
chr1 (20-74)||(47562589-47562643)
chr1 (20-82)||(52833747-52833809)
chr1 (20-89)||(6920796-6920865)
chr1 (20-89)||(16011064-16011133)
chr1 (20-89)||(29672450-29672519)
[»] scaffold0010 (1 HSPs)
scaffold0010 (20-92)||(133998-134070)
[»] chr7 (17 HSPs)
chr7 (20-92)||(9417664-9417736)
chr7 (20-92)||(19866338-19866410)
chr7 (20-92)||(27131379-27131451)
chr7 (20-90)||(3340666-3340736)
chr7 (20-82)||(32466228-32466290)
chr7 (20-80)||(31582053-31582113)
chr7 (19-55)||(42259272-42259308)
chr7 (20-92)||(45042122-45042194)
chr7 (20-95)||(9818237-9818312)
chr7 (20-95)||(10720162-10720237)
chr7 (463-494)||(25251541-25251572)
chr7 (22-92)||(7170809-7170879)
chr7 (20-82)||(18235033-18235095)
chr7 (20-82)||(29155565-29155627)
chr7 (20-82)||(34275526-34275588)
chr7 (20-82)||(44481134-44481196)
chr7 (36-82)||(46944560-46944606)
[»] scaffold0027 (1 HSPs)
scaffold0027 (20-92)||(11055-11127)
[»] scaffold0005 (1 HSPs)
scaffold0005 (20-80)||(212971-213031)
[»] scaffold0160 (1 HSPs)
scaffold0160 (20-82)||(25832-25894)


Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 399 - 943
Target Start/End: Complemental strand, 50112662 - 50112128
Alignment:
Q  399 ttttcattgatatataaaacaacttataattacctccgtgagcataactcagttagaaaagacaataatatatataaggtttggggttcaaaccccaaac 498  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  50112662 ttttcattaatatataaaacaacttataattacctccgtgagcataactcagttggaaaagacgataatatatataaggtttggggttcgaaccccaaac 50112563  T
Q  499 accaggagagnnnnnnnnncttataatttaagacaattttttcttcaaaccgacttataatctacaatggaggaaatgaatgaaaccaaattccaagata 598  Q
    ||||| | ||         ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50112562 accagaa-agaaaaaaaatcttataatttaagacaagtttttcttcaaaccgacttataatctacaatggaggaaatgaatgaaaccaaattccaagata 50112464  T
Q  599 catgaagggccaaataatgtagtaaatgagagtatgttaattcctcgtgccagccaattgctatccttttgtcattcctatgtttgaagaagaatagtaa 698  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  50112463 catgaagggccaaataatatagtaaatgagagtatgttaattcctcgtgccagccaattgctatccttttgtcattcctatgtttgaagaagaat----- 50112369  T
Q  699 tagaatcagtaatgatatttttcttttcctaaaaaagaagcttttcaattaagacgttttgtctaaataaatactccctccgatcttatctataagaaac 798  Q
         | | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50112368 -----ttattaatgatatttttcttttcctaaaaaagaagcttttcaattaagacgttttgcctaaataaatactccctccgatcttatctataagaaac 50112274  T
Q  799 agta-gttaattcctcatgcagccaattgctatctttttgtcatatgaagagtttaaggctacgttcacaatttgggaattcacttcataacttgtgatt 897  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50112273 agtacgttaattcctcatgcagccaattgctatctttttgtcatatgaagagtttaaggctacgttcacaatttgggaattcacttcataacttgtgatt 50112174  T
Q  898 cttttatgctacaaaattctctgttacttgacattatcatcacaat 943  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  50112173 cttttatgctacaaaattctcttttacttgacattatcatcacaat 50112128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 50112728 - 50112995
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaatcaaatatagacttagcttataaaccaa 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50112728 tttatctctctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaatcaaatatagacttagcttataaaccaa 50112827  T
Q  120 gctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtcaatttacttgttcatttgacc 219  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |    
T  50112828 gctacctatggttttggtcaaagtgtgactcttcgtcttccaggatgaaaactcgatataaacattcattattttagtcaatttacttgttcatttaatc 50112927  T
Q  220 tataatcatcatactttgactatcagactaatcaatgaaagaaaaaattcaagcaaaaatagtgtatt 287  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50112928 tataatcatcatactttgacgatcagactaatcaatgaaagaaaaaattcaagcaaaaatagtgtatt 50112995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 50111333 - 50111487
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  50111333 agacttagcttacaaaccaagctacctatggttttggtcaaagtgtgactcttcgtctttcaggatgaaaactcgatataaacattcattattttagtca 50111432  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  50111433 atttacttgttcatttgatctataatcatcatactttaactatcagactaatcaa 50111487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 288 - 406
Target Start/End: Original strand, 50113056 - 50113174
Alignment:
Q  288 gcttaattttggagttgacttcggtttgatggttagattgtattggttttagttttagtcatcggttggatggtgtatgtattggtgtatttgatgtctg 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  50113056 gcttaattttggagttgacttcggtttgatggttagattgtattggttttagtgttagccatcggttggatggtgtatgtattggtgtatttgatgtctg 50113155  T
Q  388 aggtgtatgtcttttcatt 406  Q
    ||||||| || ||||||||    
T  50113156 aggtgtacgtgttttcatt 50113174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 843 - 943
Target Start/End: Original strand, 50077909 - 50078009
Alignment:
Q  843 tgaagagtttaaggctacgttcacaatttgggaattcacttcataacttgtgattcttttatgctacaaaattctctgttacttgacattatcatcacaa 942  Q
    |||| |||||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50077909 tgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattctctattacttgacattatcatcacaa 50078008  T
Q  943 t 943  Q
    |    
T  50078009 t 50078009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 843 - 943
Target Start/End: Original strand, 49106939 - 49107039
Alignment:
Q  843 tgaagagtttaaggctacgttcacaatttgggaattcacttcataacttgtgattcttttatgctacaaaattctctgttacttgacattatcatcacaa 942  Q
    |||| ||| ||||||||| ||||||||| ||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  49106939 tgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttatgctacaaaattctccgttacttgacattatcatcacaa 49107038  T
Q  943 t 943  Q
    |    
T  49107039 t 49107039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 13494251 - 13494311
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctcttt 80  Q
    |||||||||||| || ||||||||||||||||||||| |||| ||| | ||||||||||||    
T  13494251 tttatctttctcatatcatttattaaggacaattttataaaacaactcataatatctcttt 13494311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 23222619 - 23222675
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatct 76  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||| | ||||||||    
T  23222619 tttatctttctcgtatcatttattaaggacaattttgtaaaataactcataatatct 23222675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 6328304 - 6328378
Alignment:
Q  20 tttatctttctcgtaccatttattaag--gacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| ||||||||||||||  |||||||||| |||||||| | ||||||||| |||  |||||||||    
T  6328304 tttatctttctcataccatttattaagaggacaattttataaaataactcataatatctcattctcatacaaaat 6328378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 388191 - 388263
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  388191 tttatctttcccatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 388263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 14604347 - 14604407
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctcttt 80  Q
    |||||| ||||| |||||||||||||||| ||||||  |||||||||| ||||||| ||||    
T  14604347 tttatcattctcataccatttattaaggataattttgtaaaataacacataatatcacttt 14604407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 32385493 - 32385421
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| |||||||||||||||| ||||||  |||||||  | |||||||| ||||| | |||||||    
T  32385493 tttatctttctcataccatttattaaggaaaattttgtaaaataattcataatatctatttcccacacaaaat 32385421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 41947697 - 41947625
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  41947697 tttatctttcccatatcatttattaaggacaattttgtaaaacaactcataatatctctttccaacacaaaat 41947625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 29890214 - 29890179
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaatttt 55  Q
    |||||||||||||||||||||||||| |||||||||    
T  29890214 tttatctttctcgtaccatttattaaagacaatttt 29890179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 10555229 - 10555167
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||||||||||  |||||||| | |||||||| |||||    
T  10555229 tttatctttcccatatcatttattaaggacaattttgtaaaataactcataatatctttttcc 10555167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 23669974 - 23669908
Alignment:
Q  188 ttattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||  |||| ||||||||| |||||  |||||||||||||||| | ||||| |||||||||||    
T  23669974 ttattttgttcaagttacttgtttatttgctctataatcatcatactattactattagactaatcaa 23669908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 26740350 - 26740288
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | ||||||||||||||    
T  26740350 tttatctttcccatatcatttattaaggacaattttgtaaaacaactcataatatctctttcc 26740288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 29290244 - 29290182
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  29290244 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 29290182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 37670064 - 37670126
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| |  |||||||||||||    
T  37670064 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcacaatatctctttcc 37670126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 43587813 - 43587875
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  43587813 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 43587875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 50111277 - 50111319
Alignment:
Q  212 atttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||| |||||||||| ||||||||||||||| |||||||||    
T  50111277 atttgatctataatcattatactttgactatcaaactaatcaa 50111319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 52920717 - 52920655
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  52920717 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 52920655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 56038549 - 56038487
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || |||||||| |||||||||||| |||| ||| | ||||||||||||||    
T  56038549 tttatctttcccatatcatttattgaggacaattttataaaacaactcataatatctctttcc 56038487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 16833737 - 16833676
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    ||||| |||||| || ||||||||||||||||||||  |||| ||| | |||||||||||||    
T  16833737 tttatttttctcatatcatttattaaggacaattttgtaaaacaactcataatatctctttc 16833676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 20540386 - 20540325
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | |||||||||||||    
T  20540386 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttc 20540325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 53988333 - 53988390
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctc 77  Q
    ||||||||| || |||||||||||||||||||||||  |||||||  | |||||||||    
T  53988333 tttatctttttcataccatttattaaggacaattttgtaaaataattcataatatctc 53988390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 399 - 841
Target Start/End: Complemental strand, 44250495 - 44250055
Alignment:
Q  399 ttttcattgatatataaaacaacttataattacctccgtgagcataactcagttagaaaagacaataatatatataaggtttggggttcaaaccccaaac 498  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||||||| | ||| ||||||||||||||||||||||  |||| ||||||| ||    
T  44250495 ttttcattgatatataaaacaacttataattatccctgtgagcataactcagttggtaaaaacaataatatatataaggtttgcagttcgaaccccagac 44250396  T
Q  499 accaggagagnnnnnnnnncttataatttaagacaattttttcttcaaaccgacttataatctacaatggaggaaatgaatgaaaccaaattccaagata 598  Q
    ||||| |||          ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  44250395 accagaaga----aaaaaacttataatttaagactattttttcttcaaaccgacttataatctgcaatggaggaaatgaatgaaaccaaattccaaaata 44250300  T
Q  599 catgaagggccaaataatgtagtaaatgagagtatgttaattcctcgtgccagccaattgctatccttttgtcattcctatgtttgaagaagaatagtaa 698  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||    
T  44250299 catgaagggccaaataatgtagtaaatgagagtatgttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaa 44250200  T
Q  699 tagaatcagtaatgatatttttcttttcctaaaaaagaagcttttcaattaagacgttttgtctaaataaatactccctccgatcttatctataagaaac 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44250199 tagaatcagtaatgatatttttcttttcctaaaaaagaagcttttcaattaagacgttttgcctaaataaatactccctccgatcttatctataagaaac 44250100  T
Q  799 agta-gttaattcctcatg-cagccaattgctatctttttgtcat 841  Q
     ||| |||||||||||||| |||||||||||||||||||||||||    
T  44250099 ggtacgttaattcctcatgccagccaattgctatctttttgtcat 44250055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 22012144 - 22011994
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||||| ||| |||| |||||||||| ||| ||| ||||||||||||||| |||||||||||||||    ||||||||||    
T  22012144 agacttagcttacaaaccaagctaccaatggttttcgtcaaagtgtaacttttcatcttccaggatgaaaactcgatataaacatt----attttagtca 22012049  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  22012048 atttacttgttcatttgatctgtaatcatcatactttgactatcatactaatcaa 22011994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 634 - 765
Target Start/End: Complemental strand, 44250094 - 44249964
Alignment:
Q  634 gttaattcctcgtgccagccaattgctatccttttgtcattcctatgtttgaagaagaatagtaatagaatcagtaatgatatttttcttttcctaaaaa 733  Q
    ||||||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  44250094 gttaattcctcatgccagccaattgctatctttttgtcattcatatgtttgaaaaagaacagtaatataatca-taatgaaatttttcttttcctaaaaa 44249996  T
Q  734 agaagcttttcaattaagacgttttgtctaaa 765  Q
    |||||||||||||||||||||||||| |||||    
T  44249995 agaagcttttcaattaagacgttttgcctaaa 44249964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 21961734 - 21961584
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||||||| |||||||||||    |||||||| |||||    
T  21961734 agacttagcttacaaaccaagctatctatggttttggtcaaagtgtgacttttcatcttcaaggatgaaaactcgatataaa----cattatttgagtca 21961639  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  21961638 atttatttgttcatttgatctataatcatcatactttgattatcatactaatcaa 21961584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 21961144 - 21960994
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||| |||||||||||||||     ||| |||||    
T  21961144 agacttagcttagaaaccaagctacctatggttttggtcaaagtgtgacttttcatcttccagaatgaaaactcgatataaacattt----tttcagtca 21961049  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||| | |||||||||||| | |||||||||||||||||||||||| |||||||||    
T  21961048 attaagttgttcatttgatcgataatcatcatactttgactatcatactaatcaa 21960994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 21961570 - 21961420
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||| | ||| | ||| ||||||||| |||||||||||    |||||||| |||||    
T  21961570 agacttagcttacaaaccaagctacctatggttttggtcaaagtgtgaattttcattttcaaggatgaaaactcgatataaa----cattatttgagtca 21961475  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||| |||||||||||| | ||||||||||| |||||||||    
T  21961474 atttacttgttcatttgatctataatcatcacagtttgactatcatactaatcaa 21961420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 21960980 - 21960830
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||| || |||||| |||||||||||||||     ||| |||||    
T  21960980 agacttagcttagaaaccaagctacctatggttttggtcaaagtgtgacttttcatcttcaagaatgaaaactcgatataaacattg----tttcagtca 21960885  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||| | |||||||||||| | |||||||||||||||||||||||| |||||||||    
T  21960884 attaatttgttcatttgatcgataatcatcatactttgactatcatactaatcaa 21960830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 21961308 - 21961158
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||| ||||| |||||||| |||||||| ||||||||||||| ||||| ||| ||||| ||||||||| ||| ||||||     |||||||| |||||    
T  21961308 agacttggcttacaaaccaagttacctatggttttggtcaaagtttgacttttcatcttcaaggatgaaaactcaatataa----gcattatttcagtca 21961213  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||||||||||||||||||  ||||||||||||||||||||||| | |||||||||    
T  21961212 atttacttgttcatttgatatataatcatcatactttgactataatactaatcaa 21961158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 44253692 - 44253555
Alignment:
Q  622 aaatgagagtatg-ttaattcctcgtgccagccaattgctatccttttgtcattcctatgtttgaagaagaatagtaatagaatcagtaatgatattttt 720  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||| |||      |||||||| ||||||| |||||||    
T  44253692 aaatgggagtatggttaattcctcgttccagccaattgctatcctcttgtctttcctatgtttgaaaaag------aatagaataagtaatg-tattttt 44253600  T
Q  721 cttttcctaaaaaagaagcttttcaattaagacgttttgtctaaa 765  Q
     | |||||||||||||||||||||||||||||||||||| |||||    
T  44253599 ttcttcctaaaaaagaagcttttcaattaagacgttttgcctaaa 44253555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 44250569 - 44250641
Alignment:
Q  28 tctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaatcaaatata 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44250569 tctcataccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaatcaaatata 44250641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 21960816 - 21960732
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacat 184  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  21960816 agacttagcttacaaaccaagctacctatggttttggtcaaagtgtgacttttcatcttccaggatgaaaactcgatataaacat 21960732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 21961816 - 21961748
Alignment:
Q  186 cattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21961816 cattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaatcaa 21961748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 22013436 - 22013368
Alignment:
Q  186 cattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  22013436 cattattttagtctatttacttgttcatttgatctataatcatcatactttgactatcatactaatcaa 22013368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 21961390 - 21961322
Alignment:
Q  186 cattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  21961390 cattatttcagttaatttacttgttcatttgatctataatcatcatactttgactatcatactaatcaa 21961322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 22011980 - 22011911
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaa 169  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||||||| ||| | |||||||||||||    
T  22011980 agacttagcttacaaaccaagctacttatggttttggtcaaagtgtgacttttcattttccaggatgaaa 22011911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 19735339 - 19735405
Alignment:
Q  188 ttattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||||||||||||| ||||||||||||| || ||||||||||| |||||||||||| | |||||||||    
T  19735339 ttattttagtcaaattacttgttcattagatctataatcatcttactttgactattacactaatcaa 19735405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 14762489 - 14762561
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||| | |||||| ||||| | |||||||||    
T  14762489 tttatctttctcataccatttattaaggacaattttataaaacaactcataatatttcttttccatacaaaat 14762561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 30597181 - 30597119
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  30597181 tttatctttctcatatcatttattaaggacaattttgtaaaataactcataatatctctttcc 30597119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 11587892 - 11587823
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||||||||||| ||||||    
T  11587892 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccatacaa 11587823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 21962580 - 21962540
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaa 140  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  21962580 agacttagcttacaaaccaagctacctatgattttggtcaa 21962540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 600184 - 600122
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  600184 tttatctttcccatatcatttattaaggacaattttgtaaaataactcataatatctctttcc 600122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 4631072 - 4631010
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||| |||| ||| | ||||||||||||||    
T  4631072 tttatctttctcatatcatttattgaggacaattttataaaacaactcataatatctctttcc 4631010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 14810011 - 14809942
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | |||||||||||||| ||||||    
T  14810011 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcccatacaa 14809942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 3562403 - 3562339
Alignment:
Q  28 tctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    ||||||||||||||||||||||||||||  |||| ||| |  ||| ||||||||| |||||||||    
T  3562403 tctcgtaccatttattaaggacaattttgtaaaacaactcaaaatgtctctttcccatacaaaat 3562339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 6010247 - 6010175
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  6010247 tttatctttcccatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 6010175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 27919559 - 27919487
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  27919559 tttatctttcacatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 27919487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 34865788 - 34865844
Alignment:
Q  36 catttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    ||||||||||||||||||||  |||||||| | |||||||||||||| | |||||||    
T  34865788 catttattaaggacaattttgtaaaataactcataatatctctttcccacacaaaat 34865844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 2099087 - 2099040
Alignment:
Q  35 ccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||||||||||||  |||||||| | ||||||||||||||    
T  2099087 ccatttattaaggacaattttgtaaaataactcataatatctctttcc 2099040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 9268084 - 9268127
Alignment:
Q  37 atttattaaggacaattttacaaaataacacttaatatctcttt 80  Q
    |||||||||||||||||||| |||||||| | ||||||||||||    
T  9268084 atttattaaggacaattttataaaataactcataatatctcttt 9268127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 502
Target Start/End: Complemental strand, 13284295 - 13284256
Alignment:
Q  463 ataatatatataaggtttggggttcaaaccccaaacacca 502  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  13284295 ataatatatataaggtttgaggttcaaaccccaaccacca 13284256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 11714586 - 11714648
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || |||||||| |||||||||||  |||||||| | ||||||||||||||    
T  11714586 tttatctttcccatatcatttattgaggacaattttgtaaaataactcataatatctctttcc 11714648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 16872493 - 16872431
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||||||||||| |||| ||| | |||||||| |||||    
T  16872493 tttatctttcacatatcatttattaaggacaattttataaaacaactcataatatctatttcc 16872431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 24616662 - 24616724
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  24616662 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 24616724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 30526305 - 30526367
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  30526305 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 30526367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 32629726 - 32629664
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  32629726 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 32629664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 37505103 - 37505165
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  37505103 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 37505165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 42192358 - 42192296
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  42192358 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 42192296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 42981341 - 42981403
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  42981341 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 42981403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 12000640 - 12000709
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||| | || ||||||||||||| ||||||  |||| ||| | |||||||||||||| ||||||    
T  12000640 tttatctttcccatatcatttattaaggataattttgtaaaacaactcataatatctctttcccatacaa 12000709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 35544126 - 35544057
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    ||||| |||||| || |||||||| |||||||||||  |||| ||| | |||||||||||||| ||||||    
T  35544126 tttatttttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcccatacaa 35544057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 2e-52; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 21503043 - 21502893
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||| ||| |||||| |||||||||||||||    ||||||||||    
T  21503043 agacttagcttacaaaccaagctacctatggttttggtcaaagtgtgactattcatctttcagaatgaaaactcgatataaacatt----attttagtca 21502948  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21502947 atttacttgttcatttgatctataatcatcatactttgactatcagactaatcaa 21502893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 21503125 - 21503057
Alignment:
Q  186 cattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  21503125 cattattttagtcaatttacttgttcatttgatctataatcatcgtactttgactatcagactaatcaa 21503057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 5748591 - 5748529
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    ||||||||||||||| ||||||||||||||||||||  |||| ||| | ||||||||||||||    
T  5748591 tttatctttctcgtatcatttattaaggacaattttgtaaaacaactcataatatctctttcc 5748529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 27183201 - 27183263
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  27183201 tttatctttctcatatcatttattaaggacaattttgtaaaataactcgtaatatctctttcc 27183263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 27832743 - 27832805
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  27832743 tttatctttctcatatcatttattaaggacaattttgtaaaataactcgtaatatctctttcc 27832805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 848 - 914
Target Start/End: Complemental strand, 43849761 - 43849695
Alignment:
Q  848 agtttaaggctacgttcacaatttgggaattcacttcataacttgtgattcttttatgctacaaaat 914  Q
    |||| |||||||||||||||||  || |||||||||||||| ||||||||||||||  |||||||||    
T  43849761 agttgaaggctacgttcacaatcaggaaattcacttcataatttgtgattcttttacactacaaaat 43849695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 10197952 - 10197880
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | |||||||||||||| |||||||||    
T  10197952 tttatctttcccataacatttattaaggacaattttgtaaaacaactcataatatctctttcccatacaaaat 10197880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 15848773 - 15848845
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||| |||| ||| | |||||||||||||| | |||||||    
T  15848773 tttatctttcccatatcatttattaaggacaattttataaaacaactcataatatctctttcccacacaaaat 15848845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 18450063 - 18449991
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  18450063 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 18449991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 5421582 - 5421644
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  5421582 tttatctttcccatatcatttattaaggacaattttgtaaaataactcataatatctctttcc 5421644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 8341614 - 8341552
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||| |||| ||| | ||||||||||||||    
T  8341614 tttatctttctcatatcatttattaaggataattttataaaacaactcataatatctctttcc 8341552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 1684268 - 1684196
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||| ||||||| | |||||||    
T  1684268 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatttctttcccacacaaaat 1684196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 5274574 - 5274502
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    ||||| |||||| ||| ||||||||| |||||||||| |||| ||| | ||||||||||||| ||| ||||||    
T  5274574 tttatttttctcatactatttattaaagacaattttataaaacaactcataatatctctttcttattcaaaat 5274502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 12363768 - 12363840
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||| ||||||| |||| ||| | |||||||| ||||| | |||||||    
T  12363768 tttatctttctcatatcatttattaaggataattttataaaacaactcataatatctatttcccacacaaaat 12363840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 40649199 - 40649271
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  40649199 tttatctttcccatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 40649271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 4826446 - 4826501
Alignment:
Q  27 ttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    ||||| || ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  4826446 ttctcatatcatttattaaggacaattttgtaaaataactcataatatctctttcc 4826501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 37742789 - 37742824
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaatttt 55  Q
    |||||||||||| |||||||||||||||||||||||    
T  37742789 tttatctttctcataccatttattaaggacaatttt 37742824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 1205060 - 1205122
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||| |||||| ||||||| |||| ||| | ||||||||||||||    
T  1205060 tttatctttctcatatcatttaataaggataattttataaaacaactcataatatctctttcc 1205122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 9047372 - 9047310
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  9047372 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 9047310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 12467777 - 12467839
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  12467777 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 12467839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 27245034 - 27245096
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  27245034 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 27245096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 27341721 - 27341659
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||||| |||||    
T  27341721 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctatttcc 27341659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 29843795 - 29843733
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||||| |||||    
T  29843795 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctatttcc 29843733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 36602161 - 36602099
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    ||||||||| || || ||||||||||||||||||||  |||| ||| | ||||||||||||||    
T  36602161 tttatctttttcatatcatttattaaggacaattttgtaaaacaactcataatatctctttcc 36602099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 42056184 - 42056246
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||| ||||||| |||| ||| | ||||||||||||||    
T  42056184 tttatctttcccatatcatttattaaggataattttataaaacaactcataatatctctttcc 42056246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 22061127 - 22061196
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||| | || ||||||||||||| ||||||| |||| ||| | |||||||| ||||| ||||||    
T  22061127 tttatctttcccatatcatttattaaggataattttataaaacaactcataatatctttttcccatacaa 22061196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 39407924 - 39407985
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | |||||||||||||    
T  39407924 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttc 39407985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 40833616 - 40833677
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    ||||||||| || || ||||||||||||| ||||||  |||||||| | |||||||||||||    
T  40833616 tttatctttatcatatcatttattaaggataattttgtaaaataactcataatatctctttc 40833677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 90; Significance: 5e-43; HSPs: 9)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 208003 - 208153
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||||||| |||||||||||    |||||||| |||||    
T  208003 agacttagcttacaaaccaagctatctatggttttggtcaaagtgtgacttttcatcttcaaggatgaaaactcgatataaa----cattatttgagtca 208098  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  208099 atttatttgttcatttgatctataatcatcatactttgattatcatactaatcaa 208153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 208167 - 208317
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||| | ||| | ||| ||||||||| |||||||||||    |||||||| |||||    
T  208167 agacttagcttacaaaccaagctacctatggttttggtcaaagtgtgaattttcattttcaaggatgaaaactcgatataaa----cattatttgagtca 208262  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||| |||||||||||| | ||||||||||| |||||||||    
T  208263 atttacttgttcatttgatctataatcatcacagtttgactatcatactaatcaa 208317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 208429 - 208579
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||| ||||| |||||||| |||||||| ||||||||||||| ||||| ||| ||||| ||||||||| ||| ||||||     |||||||| |||||    
T  208429 agacttggcttacaaaccaagttacctatggttttggtcaaagtttgacttttcatcttcaaggatgaaaactcaatataa----gcattatttcagtca 208524  T
Q  200 atttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||||||||||||||||||  ||||||||||||||||||||||| | |||||||||    
T  208525 atttacttgttcatttgatatataatcatcatactttgactataatactaatcaa 208579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 207921 - 207989
Alignment:
Q  186 cattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  207921 cattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaatcaa 207989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 212045 - 212116
Alignment:
Q  113 aaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacat 184  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  212045 aaaccaagctacctatggttttggtcaaagtgtgacttttcatcttccaggatgaaaactcgatataaacat 212116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 208347 - 208415
Alignment:
Q  186 cattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  208347 cattatttcagttaatttacttgttcatttgatctataatcatcatactttgactatcatactaatcaa 208415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 208593 - 208653
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttcc 160  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  208593 agacttagcttagaaaccaagctacctatggttttggtcaaagtgtgacttttcatcttcc 208653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 207157 - 207197
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaa 140  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  207157 agacttagcttacaaaccaagctacctatgattttggtcaa 207197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 20604 - 20676
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||||||||||  |||| |||   |||||||||||||| | |||||||    
T  20604 tttatctttctcatatcatttattaaggacaattttgtaaaacaacttataatatctctttcccaaacaaaat 20676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 17424637 - 17424502
Alignment:
Q  115 accaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtcaatttacttgttcatt 214  Q
    ||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    ||||||||||||||||| |||||||    
T  17424637 accaaactatctatggttttggtcaaagtgtgactcttcgtctttcaggatgaaaactcgatataaacatt----attttagtcaatttactagttcatt 17424542  T
Q  215 tgacctataatcatcatactttgactatcagactaatcaa 254  Q
    ||| ||||||| |||||| |||||||||||||||||||||    
T  17424541 tgatctataattatcatattttgactatcagactaatcaa 17424502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 4911511 - 4911456
Alignment:
Q  36 catttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaa 91  Q
    ||||||||||||||||||||| |||| ||||| |||||| |||||| |||||||||    
T  4911511 catttattaaggacaattttataaaacaacacataatatatctttcatatacaaaa 4911456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 6335090 - 6335152
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | ||||||||||||||    
T  6335090 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctctttcc 6335152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 6517543 - 6517481
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| |||||| ||||| ||| | ||||||||||||||    
T  6517543 tttatctttctcatatcatttattaaggataattttgcaaaacaactcataatatctctttcc 6517481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 22801820 - 22801758
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||| |||||||| | |||||||| |||||    
T  22801820 tttatctttctcatatcatttattaaggataattttataaaataactcataatatctttttcc 22801758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 4890081 - 4890012
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | |||||||||||||||| ||||    
T  4890081 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcctacacaa 4890012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 2123805 - 2123745
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctcttt 80  Q
    |||||||||||| |||||||||||||||| ||||||  |||| ||| | ||||||||||||    
T  2123805 tttatctttctcataccatttattaaggataattttgtaaaacaactcataatatctcttt 2123745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 39932958 - 39933017
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctt 79  Q
    |||||||||||| |||||||||||||||| ||||||  |||||||| | |||| ||||||    
T  39932958 tttatctttctcataccatttattaaggataattttgtaaaataactcataatttctctt 39933017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 2606554 - 2606492
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| |||| |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  2606554 tttatctttcccgtatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 2606492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 27187346 - 27187284
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  27187346 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 27187284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 27293432 - 27293370
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  27293432 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 27293370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 31196187 - 31196125
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||||||  | |||||||| |||||    
T  31196187 tttatctttctcatatcatttattaaggacaattttgtaaaataattcataatatctatttcc 31196125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 34381955 - 34381893
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    ||||| |||||| || ||||||||||||| ||||||  |||||||| | ||||||||||||||    
T  34381955 tttatgtttctcatatcatttattaaggataattttgtaaaataactcataatatctctttcc 34381893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 35870078 - 35870140
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  35870078 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 35870140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 36347340 - 36347278
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  36347340 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 36347278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 39895933 - 39895871
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  39895933 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 39895871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 40029673 - 40029619
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatat 74  Q
    |||||||||||| ||| |||||||||||||||||||| |||| ||| | ||||||    
T  40029673 tttatctttctcatactatttattaaggacaattttataaaacaactcataatat 40029619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 42940914 - 42940976
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  42940914 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 42940976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 4456541 - 4456610
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||| | || ||||||||||||| ||||||  |||| ||| | |||||||||||||| ||||||    
T  4456541 tttatctttcccatatcatttattaaggataattttgtaaaacaactcataatatctctttcccatacaa 4456610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 10601947 - 10601902
Alignment:
Q  36 catttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    ||||||||||||||||||||| |||||||| | |||||||| ||||    
T  10601947 catttattaaggacaattttataaaataactcataatatctatttc 10601902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 35080414 - 35080483
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | |||||||| ||||| ||||||    
T  35080414 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctttttcccatacaa 35080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 40275314 - 40275253
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | |||||||||||||    
T  40275314 tttatctttcccatatcatttattaaggacaattttgtaaaacaactcataatatctctttc 40275253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 83; Significance: 8e-39; HSPs: 3)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 19585 - 19462
Alignment:
Q  105 tagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtcaattta 204  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||||    |||||||||||||||||||    
T  19585 tagcttacaaaccaagctacctattgttttggtcaaagtgtgacttttcgtcttccaggatgaaaactcgatataaa----cattattttagtcaattta 19490  T
Q  205 cttgttcatttgacctataatcatcata 232  Q
    ||||||||||||| |||| |||||||||    
T  19489 cttgttcatttgatctattatcatcata 19462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 19687 - 19587
Alignment:
Q  100 agacttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtca 199  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||||    ||||||||||||||    
T  19687 agacttagcttacaaaccaagctacctattgttttggtcaaagtgtgacttttcgtcttccaggatgaaaactcgatataaa----cattattttagtca 19592  T
Q  200 attta 204  Q
    |||||    
T  19591 attta 19587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 19787 - 19701
Alignment:
Q  164 atgaaagctcgatataaacattcattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||| |||||||||||||||    ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  19787 atgaaaactcgatataaacatt----attttagtcaatttaattgttcatttgatctataatcatcatattttgactatcagactaatcaa 19701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 843 - 943
Target Start/End: Original strand, 10796319 - 10796419
Alignment:
Q  843 tgaagagtttaaggctacgttcacaatttgggaattcacttcataacttgtgattcttttatgctacaaaattctctgttacttgacattatcatcacaa 942  Q
    |||| |||||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10796319 tgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattctctattacttgacattatcatcacaa 10796418  T
Q  943 t 943  Q
    |    
T  10796419 t 10796419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 29907848 - 29907942
Alignment:
Q  142 gtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtcaatttacttgttcatttgacctataatcatcatactttgact 240  Q
    |||||||  ||||||||||||||||||| |||||| ||||    ||||||||||||||| |||||||||||||     |||| ||||||||||||||||    
T  29907848 gtgtgacctttcgtcttccaggatgaaaactcgatttaaa----cattattttagtcaagttacttgttcattgattatatattcatcatactttgact 29907942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 21047382 - 21047322
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctcttt 80  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||| | ||||||||||||    
T  21047382 tttatctttctcataccatttattaaggacaattttgtaaaacaactcataatatctcttt 21047322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 17360747 - 17360808
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    |||||||||||| || ||||||||||||| ||||||  |||||||| | |||||||||||||    
T  17360747 tttatctttctcatatcatttattaaggataattttgtaaaataactcataatatctctttc 17360808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 7885234 - 7885162
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||  ||| |||||||||||||||||||  ||||||||   |||||||||||| | |||||||||    
T  7885234 tttatctttcttatactatttattaaggacaattttgtaaaataactaataatatctcttttccatacaaaat 7885162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 15989722 - 15989658
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttccta 84  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||||    
T  15989722 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttccta 15989658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 21072102 - 21072042
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctcttt 80  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||| | ||||||| ||||    
T  21072102 tttatctttctcataccatttattaaggacaattttgtaaaacaactcataatatcacttt 21072042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 25509929 - 25509857
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||| | ||| || ||||||  |||||||||    
T  25509929 tttatctttctcataccatttattaaggacaattttgtaaaacaactcataacatgtctttctcatacaaaat 25509857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 30240354 - 30240426
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | |||||||||||||| | |||||||    
T  30240354 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcccacacaaaat 30240426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 30510872 - 30510816
Alignment:
Q  36 catttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    ||||||||||||||||||||  |||| ||| | |||||||||||||| |||||||||    
T  30510872 catttattaaggacaattttgtaaaacaactcataatatctctttcccatacaaaat 30510816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 33841383 - 33841455
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    ||||||||||||||||||||||||||||| ||||||  |||| |||   |||||| ||||||| | |||||||    
T  33841383 tttatctttctcgtaccatttattaaggataattttgtaaaacaacttataatatttctttcccacacaaaat 33841455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 29906402 - 29906494
Alignment:
Q  142 gtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtcaatttacttgttcatttgacctataatcatcatactttga 238  Q
    |||||||  |||||||||||||||||||  ||||| ||||    ||||||||||||||| ||||||||||||  |   |||| ||||||||||||||    
T  29906402 gtgtgacctttcgtcttccaggatgaaaaatcgatttaaa----cattattttagtcaagttacttgttcataggttatatattcatcatactttga 29906494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 30117978 - 30117886
Alignment:
Q  142 gtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtcaatttacttgttcatttgacctataatcatcatactttga 238  Q
    |||||||  |||||||||||||||||||  ||||| ||||||||    ||||||||||| ||||||||||||  |   |||| ||||||||||||||    
T  30117978 gtgtgacctttcgtcttccaggatgaaaaatcgatttaaacatt----attttagtcaagttacttgttcataggttatatattcatcatactttga 30117886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 8201608 - 8201670
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  8201608 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 8201670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 9660359 - 9660297
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | ||||||||||||||    
T  9660359 tttatctttcccatatcatttattaaggacaattttgtaaaacaactcataatatctctttcc 9660297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 12499604 - 12499542
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  12499604 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 12499542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 12506933 - 12506871
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  12506933 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 12506871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 12509297 - 12509359
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  12509297 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 12509359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 13631196 - 13631134
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  13631196 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 13631134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 14310900 - 14310838
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  14310900 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 14310838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 30739285 - 30739223
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  30739285 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 30739223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 31949274 - 31949212
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  31949274 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 31949212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 4981270 - 4981209
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    |||||||||||| ||  |||||||||||||||||||  |||| ||| | |||||||||||||    
T  4981270 tttatctttctcatataatttattaaggacaattttgtaaaacaactcataatatctctttc 4981209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 12278560 - 12278491
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||| ||||||||||  |||| ||| | |||||||| ||||| ||||||    
T  12278560 tttatctttctcatatcatttattatggacaattttgtaaaacaactcataatatctttttcccatacaa 12278491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 19098667 - 19098735
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | |||||||||||||| ||||||    
T  19098667 tttatctttctcatatcatttattgaggacaattttgtaaaacaac-cataatatctctttcccatacaa 19098735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 26409195 - 26409264
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||| | || ||||||||||||| ||||||  |||| ||| | |||||||||||||| ||||||    
T  26409195 tttatctttcccatatcatttattaaggataattttgtaaaacaactcataatatctctttcccatacaa 26409264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 32772823 - 32772923
Alignment:
Q  154 gtcttccaggatgaaagctcgatataaacattcattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatca 253  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  32772823 gtcttctaggatgaaaattcgatataaacattcattattttaatcaatttatttgttcatttgatttataatcatcatactttgactatcagactgatca 32772922  T
Q  254 a 254  Q
    |    
T  32772923 a 32772923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 49384387 - 49384325
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  49384387 tttatctttctcatatcatttattaaggacaattttgtaaaataactcataatatctctttcc 49384325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 20394125 - 20394053
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  20394125 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 20394053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 30767823 - 30767751
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || |||||||||| |||||||||  ||||| || | |||||||||||||||| |||||||    
T  30767823 tttatctttctcatatcatttattaaagacaattttgtaaaattactcataatatctctttcctacacaaaat 30767751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 51166416 - 51166354
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||||||||||| |||||||| | |||||| |||||||    
T  51166416 tttatctttcccatatcatttattaaggacaattttataaaataactcataatatttctttcc 51166354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 52915171 - 52915233
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||||||| | ||||||||||||||    
T  52915171 tttatctttctcatatcatttattgaggacaattttgtaaaataactcataatatctctttcc 52915233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 30745000 - 30745069
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | |||||||||||||||| ||||    
T  30745000 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcctacacaa 30745069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 34344502 - 34344575
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaatcaa 95  Q
    |||||||||||| ||| ||||||||| |||||||||| |||| |  | ||||||||||||||  ||||||||||||    
T  34344502 tttatctttctcatactatttattaaagacaattttataaaaca--atttaatatctctttctcatacaaaatcaa 34344575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 3645839 - 3645777
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  3645839 tttatctttctcatatcatttattgaggacaattttgtaaaacaacccataatatctctttcc 3645777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 8104378 - 8104440
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  8104378 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 8104440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 19960959 - 19960897
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||| |||||||||||||  |||| ||| | ||||||||||||||    
T  19960959 tttatctttctcatatcatttactaaggacaattttgtaaaacaactcataatatctctttcc 19960897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 25904042 - 25903980
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  25904042 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 25903980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 27848819 - 27848757
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  27848819 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 27848757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 29343350 - 29343412
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  29343350 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 29343412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 36669296 - 36669358
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  36669296 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 36669358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 47054144 - 47054206
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  47054144 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 47054206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 52040383 - 52040321
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||| ||||||  |||||||| | ||||||||||||||    
T  52040383 tttatctttctcatatcatttattgaggataattttgtaaaataactcataatatctctttcc 52040321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 52679721 - 52679659
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  52679721 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 52679659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 53655100 - 53655038
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || |||||||| |||||||||||| |||| ||| | ||||||||||||||    
T  53655100 tttatctttcccatatcatttattgaggacaattttataaaacaactcataatatctctttcc 53655038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 23782213 - 23782282
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | |||||||| ||||| ||||||    
T  23782213 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctatttcccatacaa 23782282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 29227304 - 29227235
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||| | || ||||||||||||| ||||||  |||| ||| | |||||||||||||| ||||||    
T  29227304 tttatctttcccatatcatttattaaggataattttgtaaaacaactcataatatctctttcccatacaa 29227235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 38999592 - 38999661
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||||||| ||||||  |||| |||   |||||||||||||| ||||||    
T  38999592 tttatctttctcatatcatttattaaggataattttgtaaaacaacttataatatctctttcccatacaa 38999661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 49615444 - 49615501
Alignment:
Q  19 ttttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatct 76  Q
    |||||||||||||||| ||||||||||||| |||||  ||||| ||| | ||||||||    
T  49615444 ttttatctttctcgtatcatttattaaggataatttctcaaaacaactcataatatct 49615501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 54747843 - 54747782
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | |||||||||||||    
T  54747843 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttc 54747782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 55395354 - 55395321
Alignment:
Q  463 ataatatatataaggtttggggttcaaaccccaa 496  Q
    ||||||||| ||||||||||||||||||||||||    
T  55395354 ataatatatgtaaggtttggggttcaaaccccaa 55395321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 52071043 - 52071111
Alignment:
Q  186 cattattttagtcaatttacttgttcatttgacctataatcatcatactttgactatcagactaatcaa 254  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52071043 cattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaatcaa 52071111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 52071127 - 52071204
Alignment:
Q  102 acttagcttataaaccaagctacctatgattttggtcaaagtgtgactcttcgtcttccaggatgaaagctcgatata 179  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  52071127 acttagcttacaaaccaagctacctatggttttggtcaaagtgtgacttttcgtcttccaggatgaaaactcgatata 52071204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 39501831 - 39501906
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaatcaa 95  Q
    |||||||||| | || ||||||||||||||||||||  |||||||| | |||||||||||||| |||||| |||||    
T  39501831 tttatctttcccatatcatttattaaggacaattttgtaaaataactcataatatctctttcccatacaatatcaa 39501906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 27952754 - 27952816
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||| | ||||||||||||||    
T  27952754 tttatctttctcataccatttattaaggacaattttgtaaaacaactcataatatctctttcc 27952816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 2363515 - 2363421
Alignment:
Q  142 gtgtgactcttcgtcttccaggatgaaagctcgatataaacattcattattttagtcaatttacttgttcatttgacctataatcatcatactttgact 240  Q
    |||||||  ||||||| ||||||||||| ||| || ||||||||    ||||||||||| |||||  ||||||||| |||| |||||||||||||||||    
T  2363515 gtgtgacctttcgtctaccaggatgaaaactcaatttaaacatt----attttagtcaagttactgtttcatttgatctattatcatcatactttgact 2363421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 44789416 - 44789477
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttc 81  Q
    |||||||||||| || ||||||||||||| ||||||  |||||||| | |||||||||||||    
T  44789416 tttatctttctcatatcatttattaaggataattttgtaaaataactcgtaatatctctttc 44789477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 26551605 - 26551533
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||  |||||||| | ||||||||| |||| | |||||||    
T  26551605 tttatctttcccatatcatttattaaggacaattttgtaaaataactcataatatctcattcccacacaaaat 26551533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 52177931 - 52178003
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||| |||||||| |||||  || | |||||||||||||| | |||||||    
T  52177931 tttatctttctcatatcatttattaagaacaattttgcaaaacgactcataatatctctttcccacacaaaat 52178003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 5653621 - 5653559
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  5653621 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 5653559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 8712011 - 8711949
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  8712011 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 8711949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 11353708 - 11353770
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||||| |||||    
T  11353708 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctatttcc 11353770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 13985402 - 13985340
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    ||||| |||||| || ||||||||||||||||||||  |||| ||| | ||||||||||||||    
T  13985402 tttatttttctcatatcatttattaaggacaattttgtaaaacaactcataatatctctttcc 13985340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 14203080 - 14203142
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  14203080 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 14203142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 24589646 - 24589708
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || ||||||||||||| ||||||  |||||||| | ||||||||||||||    
T  24589646 tttatctttcccatatcatttattaaggataattttgtaaaataactcataatatctctttcc 24589708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 30093776 - 30093746
Alignment:
Q  22 tatctttctcgtaccatttattaaggacaat 52  Q
    |||||||||||||||||||||||||||||||    
T  30093776 tatctttctcgtaccatttattaaggacaat 30093746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 34967464 - 34967402
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  34967464 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 34967402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 38816996 - 38817058
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  38816996 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 38817058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 44343777 - 44343715
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  44343777 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 44343715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 47562589 - 47562643
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatat 74  Q
    |||||||||||| || ||||||||||||||||||||| |||| || || ||||||    
T  47562589 tttatctttctcatatcatttattaaggacaattttataaaacaatacataatat 47562643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 52833747 - 52833809
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  52833747 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcgtaatatctctttcc 52833809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 6920865 - 6920796
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || |||||||| |||| ||||||  |||| ||| | |||||||||||||||| ||||    
T  6920865 tttatctttctcatatcatttattgaggataattttgtaaaacaactcataatatctctttcctacacaa 6920796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 16011064 - 16011133
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||| | || |||||||| |||||||||||  |||| ||| | |||||||||||||||| ||||    
T  16011064 tttatctttcccatatcatttattgaggacaattttgtaaaacaactcataatatctctttcctacacaa 16011133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 29672450 - 29672519
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaa 89  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | |||||||||||| | ||||||    
T  29672450 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctcttttccatacaa 29672519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 133998 - 134070
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||||||| ||||||||||||||| |||  |||||||| | |||||||| ||||  |||||||||    
T  133998 tttatctttctcgtacaatttattaaggacaaatttgtaaaataactcataatatctttttctcatacaaaat 134070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 9417736 - 9417664
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  9417736 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 9417664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 19866410 - 19866338
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  19866410 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 19866338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 27131451 - 27131379
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| ||| |||||||||| ||||||||  |||| ||| | |||||||||||||||| |||||||    
T  27131451 tttatctttctcatactatttattaagaacaattttgtaaaacaactcataatatctctttcctacacaaaat 27131379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 3340736 - 3340666
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaa 90  Q
    |||||||||| | |||||||||||||| ||||||||  |||| || || |||||||||||||| |||||||    
T  3340736 tttatctttcacataccatttattaagaacaattttgtaaaacaatacataatatctctttcccatacaaa 3340666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 32466290 - 32466228
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| |||||||||||||||| ||||||| |||| ||| | |||| |||||||||    
T  32466290 tttatctttctcataccatttattaaggataattttataaaacaactcataatttctctttcc 32466228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 31582113 - 31582053
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctcttt 80  Q
    |||||||||||| || ||||||||||||||||||||  |||| ||| | ||||||||||||    
T  31582113 tttatctttctcatatcatttattaaggacaattttgtaaaacaactcataatatctcttt 31582053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 42259272 - 42259308
Alignment:
Q  19 ttttatctttctcgtaccatttattaaggacaatttt 55  Q
    |||||||||||||||| ||||||||||||||||||||    
T  42259272 ttttatctttctcgtatcatttattaaggacaatttt 42259308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 45042122 - 45042194
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||||| || ||||||||||||| ||||||  |||||||| | |||||||| ||||| | |||||||    
T  45042122 tttatctttctcatatcatttattaaggataattttgtaaaataactcataatatctatttcccacacaaaat 45042194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 9818237 - 9818312
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaatcaa 95  Q
    |||||||||||| || |||||||||| |||||||||  |||||||| | |||||||| ||||| | |||| |||||    
T  9818237 tttatctttctcatatcatttattaaagacaattttgtaaaataactcataatatctatttcccacacaatatcaa 9818312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 10720162 - 10720237
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaatcaa 95  Q
    |||||||||||| || |||||||||| |||||||||  |||||||| | |||||||| ||||| | |||| |||||    
T  10720162 tttatctttctcatatcatttattaaagacaattttgtaaaataactcataatatctatttcccacacaatatcaa 10720237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 25251541 - 25251572
Alignment:
Q  463 ataatatatataaggtttggggttcaaacccc 494  Q
    ||||||||||||||||||||||||||||||||    
T  25251541 ataatatatataaggtttggggttcaaacccc 25251572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 7170809 - 7170879
Alignment:
Q  22 tatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| ||||||||||||| |||||||||  |||| ||| | |||||||| ||| | |||||||||    
T  7170809 tatctttctcataccatttattaatgacaattttgtaaaacaactcataatatcttttttccatacaaaat 7170879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 18235033 - 18235095
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  18235033 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 18235095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 29155627 - 29155565
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  29155627 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 29155565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 34275588 - 34275526
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||| | || |||||||| |||||||||||  |||||||| | ||||||||||||||    
T  34275588 tttatctttcccatatcatttattgaggacaattttgtaaaataactcataatatctctttcc 34275526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 44481134 - 44481196
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || |||||||| |||||||||||  |||| ||| | ||||||||||||||    
T  44481134 tttatctttctcatatcatttattgaggacaattttgtaaaacaactcataatatctctttcc 44481196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 46944606 - 46944560
Alignment:
Q  36 catttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    ||||||||||||||||||||| |||| ||| | ||||||||||||||    
T  46944606 catttattaaggacaattttataaaacaactcataatatctctttcc 46944560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 11127 - 11055
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcctatacaaaat 92  Q
    |||||||||| | || ||||||||||||||||||||  |||| ||| | |||||||||||||| | |||||||    
T  11127 tttatctttcccatatcatttattaaggacaattttgtaaaacaactcataatatctctttcccacacaaaat 11055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 213031 - 212971
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctcttt 80  Q
    |||||| ||||| |||||||||||||||| ||||||  |||||||||| ||||||| ||||    
T  213031 tttatcattctcataccatttattaaggataattttgtaaaataacacataatatcacttt 212971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 25894 - 25832
Alignment:
Q  20 tttatctttctcgtaccatttattaaggacaattttacaaaataacacttaatatctctttcc 82  Q
    |||||||||||| || ||||||||||||| ||||||  |||| ||| | ||||||||||||||    
T  25894 tttatctttctcatatcatttattaaggataattttgtaaaacaactcataatatctctttcc 25832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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