View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21599_low_10 (Length: 243)
Name: NF21599_low_10
Description: NF21599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21599_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 1309693 - 1309489
Alignment:
| Q |
20 |
aaatccacattttgcaattaccaacataaatctacagcttataaacaatatttttctgcatcaacataactcttgccatatgctataaaacttaatgacc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1309693 |
aaatccacattttgcaattaccaacataaatctacagcttataaataatatttttctgcatcaacataactcttgccatatgctataaaacttaatgacc |
1309594 |
T |
|
| Q |
120 |
cttttgaacattnnnnnnnnnnnnnncagaatctttaaaacataagattgagattttctaactttgtggagggaagtcaccaagacgttctccctatttc |
219 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1309593 |
cttttgaacatt---aaaaaagaaaacagaatccttaaaacataagattgagattttctaactttgtggagggaagtcaccaagacgttctccctatttc |
1309497 |
T |
|
| Q |
220 |
tctcctat |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
1309496 |
tctcctat |
1309489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University