View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21599_low_2 (Length: 539)

Name: NF21599_low_2
Description: NF21599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21599_low_2
NF21599_low_2
[»] chr7 (5 HSPs)
chr7 (107-524)||(48635598-48636012)
chr7 (47-98)||(9805434-9805485)
chr7 (39-98)||(35081601-35081660)
chr7 (39-97)||(35080283-35080341)
chr7 (48-98)||(23621990-23622040)
[»] chr2 (5 HSPs)
chr2 (39-98)||(27552451-27552510)
chr2 (39-98)||(12812835-12812894)
chr2 (47-97)||(27553815-27553865)
chr2 (49-94)||(10853155-10853200)
chr2 (50-98)||(10851912-10851960)
[»] chr4 (4 HSPs)
chr4 (39-98)||(8747690-8747749)
chr4 (39-98)||(8749046-8749105)
chr4 (39-97)||(33997896-33997954)
chr4 (39-98)||(8896953-8897012)
[»] chr5 (5 HSPs)
chr5 (39-98)||(124529-124588)
chr5 (39-97)||(5504136-5504194)
chr5 (39-98)||(5502917-5502975)
chr5 (41-97)||(3598924-3598980)
chr5 (39-98)||(121348-121407)
[»] chr3 (7 HSPs)
chr3 (39-98)||(51220602-51220661)
chr3 (39-97)||(10584082-10584140)
chr3 (39-97)||(32829740-32829798)
chr3 (41-97)||(26722533-26722589)
chr3 (47-98)||(53157184-53157234)
chr3 (39-97)||(51219462-51219520)
chr3 (49-98)||(32831100-32831149)
[»] chr1 (4 HSPs)
chr1 (39-97)||(46312065-46312123)
chr1 (49-98)||(3000223-3000272)
chr1 (47-97)||(46525850-46525900)
chr1 (49-97)||(2999491-2999539)
[»] chr8 (3 HSPs)
chr8 (49-98)||(13883878-13883927)
chr8 (41-98)||(38612218-38612275)
chr8 (41-98)||(38613419-38613476)
[»] chr6 (1 HSPs)
chr6 (39-94)||(22417661-22417716)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 107 - 524
Target Start/End: Complemental strand, 48636012 - 48635598
Alignment:
Q  107 ttgctaaaactgtactctattgttgcatatagtagaagttgacggcttgtgagacacttgtggaggaggtacgtacactgaatgcattgtttatgaatga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||||||||    
T  48636012 ttgctaaaactgtactctattgttgcatatagtagaagttgacggcttgtgagacacttgtggaggaggtac----aatgaatgcattgtttatgaatga 48635917  T
Q  207 atgaatgaaatcaagccttgttatgattttctcatggtattcagcttacaacatgtgcttcaacttcgacgttcaaccc-ttaaaaaataaacaattgta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  48635916 atgaatgaaatcaagccttgttatgattttctcatggtattcagcttacaacatgtgcttcaacttcgatgttcaaccccttaaaaaataaacaattgta 48635817  T
Q  306 tcctgattgatctttgtcgacggtcataaagagaatgtaattaaaggaagaatgaacaaaatcttatatccaccttgatcactgttctgttcctattttt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48635816 tcctgattgatctttgtcgacggtcataaagagaatgtaattaaaggaagaatgaacaaaatcttatatccaccttgatcactgttctgttcctattttt 48635717  T
Q  406 atgctcacctttgatacttttctaataaatcttttgatattatatatccaccttgatttcattgacaatacaagtaagaccaaggacactattttattgc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48635716 atgctcacctttgatacttttctaataaatcttttgatattatatatccaccttgatttcattgacaatacaagtaagaccaaggacactattttattgc 48635617  T
Q  506 attattaagttaaattaac 524  Q
    |||||||||||||||||||    
T  48635616 attattaagttaaattaac 48635598  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 9805434 - 9805485
Alignment:
Q  47 gccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  9805434 gccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcct 9805485  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 35081601 - 35081660
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| ||||||||| |||||||| |||| ||| ||||||||||||||||||||||||    
T  35081601 attagggcgccaaaatcgcaacattgacaaacttagggggtcaaaactgtagtttagcct 35081660  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 35080341 - 35080283
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    |||||||  |||||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  35080341 attaggggaccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcc 35080283  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 23621990 - 23622040
Alignment:
Q  48 ccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    |||||||| ||||||||||||| ||| | || |||||||||||||||||||    
T  23621990 ccaaaatcgcaacattggcaaacttaggaggccaaaactgtagtttagcct 23622040  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 27552510 - 27552451
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  27552510 attagggagccaaaatcgcaacattggcaaatttagggggtcaaaactgtagtttagcct 27552451  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 12812894 - 12812835
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| ||||||||| ||||||| ||||| ||||| |||||||||||||| |||||||    
T  12812894 attagggggccaaaatctcaacattagcaaacttaagaggtcaaaactgtagcttagcct 12812835  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 27553815 - 27553865
Alignment:
Q  47 gccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||||| ||||||| ||||| ||| ||||| |||||||||||||||||    
T  27553815 gccaaaatcgcaacattagcaaacttagggggttaaaactgtagtttagcc 27553865  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 10853155 - 10853200
Alignment:
Q  49 caaaatcacaacattggcaaatttaaggggtcaaaactgtagttta 94  Q
    ||||||| ||||||||  ||| ||||||||||||||||||||||||    
T  10853155 caaaatcgcaacattgataaagttaaggggtcaaaactgtagttta 10853200  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 10851960 - 10851912
Alignment:
Q  50 aaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    |||||| ||||||||  ||| ||| ||||||||||||||||||||||||    
T  10851960 aaaatcgcaacattgataaagttagggggtcaaaactgtagtttagcct 10851912  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 8747749 - 8747690
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  8747749 attagggggccaaaatcgcaacattggcaaacttaaggggtcaaaactgtagtttagcct 8747690  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 8749046 - 8749105
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  8749046 attagggggccaaaatcgcaacattggcaaacttaaggggtcaaaagtgtagtttagcct 8749105  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 33997896 - 33997954
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||| | ||||||| ||||||| ||||| ||| |||||||||||||||||||||||    
T  33997896 attagggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 33997954  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 8896953 - 8897012
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    |||||||  ||||||||  |||||||||||| ||| || |||||||||||||||||||||    
T  8896953 attaggggaccaaaatcgtaacattggcaaacttagggagtcaaaactgtagtttagcct 8897012  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 124529 - 124588
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  124529 attagggggccaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcct 124588  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 5504136 - 5504194
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||| | ||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  5504136 attagggggtcaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcc 5504194  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 5502975 - 5502917
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| ||||||||  ||||||||||||| ||||||| ||||||||||||||||||||    
T  5502975 attagggggccaaaattgcaacattggcaaacttaaggg-tcaaaactgtagtttagcct 5502917  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 3598924 - 3598980
Alignment:
Q  41 tagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||| ||||||||| ||||||||| ||||||| |||  ||||||||||||||||||    
T  3598924 tagggggccaaaatcgcaacattggtaaatttaggggaccaaaactgtagtttagcc 3598980  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 121407 - 121348
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| | ||||||  |||||||||||||||||  | |||||||||||||||||||||    
T  121407 attagggggtcaaaattgcaacattggcaaatttagagtgtcaaaactgtagtttagcct 121348  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 51220602 - 51220661
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| || |||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  51220602 attagggggctaaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcct 51220661  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 10584082 - 10584140
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||| ||||||||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  10584082 attagggggccaaaatcgcaacattggcaaacttaggggatcaaaactgtagtttagcc 10584140  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 32829798 - 32829740
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||||    
T  32829798 attagggggccaaaatcgcaaaattggcaaacttagggggtcaaaactgtagtttagcc 32829740  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 26722589 - 26722533
Alignment:
Q  41 tagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||| ||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||    
T  26722589 tagggggccaaaatcgcaacattggtaaacttagggggccaaaactgtagtttagcc 26722533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 53157184 - 53157234
Alignment:
Q  47 gccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    |||| |||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  53157184 gccagaatcgcaacattggcaaactta-ggggtcaaaactgtagtttagcct 53157234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 51219520 - 51219462
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||| ||||||||  |||||||| |||| ||| | |||||||||||||||||||||    
T  51219520 attagggggccaaaattgcaacattgacaaacttaggaggtcaaaactgtagtttagcc 51219462  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 32831100 - 32831149
Alignment:
Q  49 caaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| |||||||| ||||  || ||||||||||||||||||||||||    
T  32831100 caaaatcgcaacattgacaaacatagggggtcaaaactgtagtttagcct 32831149  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 46312123 - 46312065
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||| ||||||||| ||||||||| ||| ||| |||||||||||||||||||||||    
T  46312123 attagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 3000223 - 3000272
Alignment:
Q  49 caaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| |||||||  |||| ||||||||||||||||||||||||||||    
T  3000223 caaaatcgcaacattaacaaaattaaggggtcaaaactgtagtttagcct 3000272  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 46525850 - 46525900
Alignment:
Q  47 gccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||||| ||||||||||||| ||| |||| ||||||||||| ||||||    
T  46525850 gccaaaatcgcaacattggcaaacttagggggccaaaactgtagattagcc 46525900  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 2999539 - 2999491
Alignment:
Q  49 caaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcc 97  Q
    ||||||| |||||||| |||| |||  ||||||||||||||||||||||    
T  2999539 caaaatcgcaacattgacaaagttagagggtcaaaactgtagtttagcc 2999491  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 13883878 - 13883927
Alignment:
Q  49 caaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  13883878 caaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcct 13883927  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 38612275 - 38612218
Alignment:
Q  41 tagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||| ||||||||| ||||||||  ||| ||| ||||||||||||| ||||||||||    
T  38612275 tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcct 38612218  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 38613419 - 38613476
Alignment:
Q  41 tagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagtttagcct 98  Q
    ||||| ||||||||| ||||||||  ||| ||| ||||||||||||| ||||||||||    
T  38613419 tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcct 38613476  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 22417716 - 22417661
Alignment:
Q  39 attagggagccaaaatcacaacattggcaaatttaaggggtcaaaactgtagttta 94  Q
    ||||||| |||||||||  |||||| ||||| ||| ||||||||||||||||||||    
T  22417716 attagggggccaaaatcgtaacattagcaaacttagggggtcaaaactgtagttta 22417661  T

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