View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21599_low_5 (Length: 391)
Name: NF21599_low_5
Description: NF21599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21599_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 48350934 - 48351310
Alignment:
| Q |
17 |
aaaaatcaactgaaattacattaaaaattaaaagtgcttacactgtttttaaacnnnnnnnnn--------gccaaatataactattttggattggtcta |
108 |
Q |
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| T |
48350934 |
aaaaatcaactgaaattacattaaaaattaaaagtgcttacactgtttttaaacgttttttttttttttttgccaaatataactattttggattggtcta |
48351033 |
T |
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| Q |
109 |
aaggtccaattcatcaaaagcaagacaaatttaacccgacagttcgtccaagacttcttcgaaggtccacatctacaagtgtttttggacctgtaacatt |
208 |
Q |
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| T |
48351034 |
aaggtccaattcatcaaaagcaagacaaatttaacccgacaactcgtccaagacttcttcgaaggtccacatctacaagtgtttttggacttgtaacatt |
48351133 |
T |
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| Q |
209 |
cccttctcccatttgttgccttcaatgaacaaatataaacaaaatatcgaagatctaacaagaaatcatctcaaagataatgcattgccatctttcgcga |
308 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48351134 |
cccttctcccatttgttgccttcaacggacaaatataaacaaaatatcgaagatctgacaagaaatcatctcaaagataatgcattgccatctttcgcga |
48351233 |
T |
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| Q |
309 |
ctcatctcttcactataaataggttagccaatacttataaaaggtacacaatttctatctcaacacctctctgctcc |
385 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
48351234 |
ctcatctcttcactataaataggttagccaatacttgtaaaaggtacacaatttctatctcaacacctctttgctcc |
48351310 |
T |
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