View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_high_14 (Length: 274)
Name: NF2159_high_14
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 8926113 - 8926278
Alignment:
| Q |
102 |
ctttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggtg |
201 |
Q |
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| T |
8926113 |
ctttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggta |
8926212 |
T |
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| Q |
202 |
ctagttctatacatcatcaaaatttctct--------gtgcatgtttagattaacggtgaacttga |
259 |
Q |
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| T |
8926213 |
ctagttctatacatcatcaaaatttctctttaatacagtgcatgtttagattaacggtgaacttga |
8926278 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8926014 - 8926065
Alignment:
| Q |
1 |
cactcatcacagcatatactctctcaatcatatatagctgaatattgaagtgag |
54 |
Q |
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| T |
8926014 |
cactcctcacagcatatactctc--attcacatatagctgaatattgaagtgag |
8926065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 55522713 - 55522810
Alignment:
| Q |
103 |
tttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
200 |
Q |
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| T |
55522713 |
tttccagtagttgacatgaagaatcttaacactgaagagaaagcatcaaccatggagatcataaaagatgcttgtgaaaattggggtttctttgaggt |
55522810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 37628696 - 37628757
Alignment:
| Q |
139 |
gagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
200 |
Q |
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| T |
37628696 |
gagagaaaagctactatggagaaaatcaaggatgcttgtgaaaactggggattctttgaggt |
37628757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 36872765 - 36872707
Alignment:
| Q |
142 |
agaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
200 |
Q |
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| T |
36872765 |
agaaaagataccatggagaaaattaaggatgcttgtgagaattggggattctttgaggt |
36872707 |
T |
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