View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_high_16 (Length: 252)
Name: NF2159_high_16
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 39584228 - 39584452
Alignment:
| Q |
18 |
gttgggtcactccatagttgagaatctctgtgaattgcccaagcattaaccaataaaatagtgttttttgggacattataacctcctatggtgcaatctt |
117 |
Q |
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| T |
39584228 |
gttgggtcactccatagttgagaatctctgtgaattgcccaagcattaaccaataaaatagtgttttttgggacaatataacctcctatggtgcaatctt |
39584327 |
T |
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| Q |
118 |
gtgaagaaaaatgaggagccaacaatgcaaatgcaggatgcaatcgaaatgtctcgtggattatattttgtaggtaggggagttttgaaatgtctgactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39584328 |
gtgaagaaaaatgaggagccaacaatgcaaatgcaggatgcaatcgaaatgtctcgtggattatattttgtaggtaggggagttttgaaatgtctgactc |
39584427 |
T |
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| Q |
218 |
ttctactaagtgatcttgtcctatg |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
39584428 |
ttctactaagtgatcttgtcctatg |
39584452 |
T |
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