View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_high_4 (Length: 495)
Name: NF2159_high_4
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 294
Target Start/End: Original strand, 35113266 - 35113554
Alignment:
| Q |
3 |
gaaaatgtagaaaacccgagtgtgtaagatataattgtcttgtggagcaacattagaaaaaagctttgggagaattctagaaatatatccctttttatgg |
102 |
Q |
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| T |
35113266 |
gaaaatgtagaaaacccgagtgtgtaaggtataattgtcttgtggagcaacattagaaaaaagctttgggagaattctagaa-tatatccctttttatgg |
35113364 |
T |
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| Q |
103 |
aagatggtggaactttctaataatttaaaattttatgttatgccgtgggaagataaaacttattgttatcgtattagaaaatgcccatcaattaacatta |
202 |
Q |
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| T |
35113365 |
aagatggtggaactttctaataatttaaaattttatgttctgccgtgggaagataaaacttattgttt--gtattagaaaatgcccatcaattaacatta |
35113462 |
T |
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| Q |
203 |
attcaaaagtatattatgagattatgtcggtggttgaaaaacttcttgctaacatggaagtttcaaaataagtttcttgctctaagttttga |
294 |
Q |
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| T |
35113463 |
attcaaaagtatattatgagattatgtcggtggttgaaaaacttcttgctaacatggaagtttcaaaataagtttcttgctctaagttttga |
35113554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 292 - 481
Target Start/End: Original strand, 35113592 - 35113784
Alignment:
| Q |
292 |
tgacatgtgaaattttgttgatgtttaccttaaatgaattatactctatatagtagagtacgctaactctttcgaacaatgattgtcggtcatacaataa |
391 |
Q |
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| T |
35113592 |
tgacatgtgaaattttgttgatgtttaccttaaatgaattatactctatatagtagagtaccctaactcttttgaactatgattgtcggtcatacaatag |
35113691 |
T |
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| Q |
392 |
aagcaggcaaagactatatacatatgttctaattcatccttacaagacccatctgtaataaacacttcaaggt---tatatgagttttttctt |
481 |
Q |
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| T |
35113692 |
aagcaggtaaagactatatacatatgttctaattcagccttagaagtcccatctgtaataaacacttcaaggtttatatatgagttttttctt |
35113784 |
T |
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