View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2159_low_1 (Length: 598)

Name: NF2159_low_1
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2159_low_1
NF2159_low_1
[»] chr8 (3 HSPs)
chr8 (1-582)||(29150967-29151548)
chr8 (152-217)||(26387133-26387198)
chr8 (200-240)||(43884856-43884896)
[»] chr2 (9 HSPs)
chr2 (83-384)||(2595112-2595410)
chr2 (95-271)||(2580375-2580551)
chr2 (96-271)||(2575995-2576169)
chr2 (141-382)||(2585807-2586044)
chr2 (412-517)||(2576286-2576391)
chr2 (418-545)||(2586059-2586183)
chr2 (417-550)||(2595422-2595546)
chr2 (490-553)||(2580767-2580830)
chr2 (303-383)||(2580619-2580696)
[»] chr6 (1 HSPs)
chr6 (85-384)||(30398208-30398500)
[»] chr7 (4 HSPs)
chr7 (141-272)||(46768559-46768689)
chr7 (141-270)||(36259410-36259539)
chr7 (141-271)||(36254531-36254661)
chr7 (141-270)||(36262222-36262342)
[»] chr4 (8 HSPs)
chr4 (97-271)||(35766147-35766321)
chr4 (141-243)||(19353603-19353705)
chr4 (141-270)||(19358295-19358424)
chr4 (152-241)||(19360627-19360716)
chr4 (141-210)||(19355222-19355291)
chr4 (168-238)||(11240745-11240815)
chr4 (194-242)||(11240665-11240713)
chr4 (141-189)||(19356700-19356748)
[»] chr3 (2 HSPs)
chr3 (85-175)||(21621218-21621308)
chr3 (85-175)||(21642888-21642978)


Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 29150967 - 29151548
Alignment:
Q  1 ttgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgagtatgagtgatcctccggttcaacccaatgcagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  29150967 ttgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgagtatgagtgatcctccagctcaacccaatgcagag 29151066  T
Q  101 tcaccggtaagcctccctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagat 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29151067 tcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagat 29151166  T
Q  201 ctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacactaatccgagataacataggaaagaaacttat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29151167 ctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacactaatccgagataacataggcaagaaacttat 29151266  T
Q  301 tcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagatatttgttatccaagtaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151267 tcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagatatttgttatccaagtaaa 29151366  T
Q  401 gatatggaatttcgcaatgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctcaaactgtagagttctggt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29151367 gatatggaatttcgcaatgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctcaaactgtagagttttggt 29151466  T
Q  501 tccgtttctggaaccctgtcgtacttacaatgtcaaaaaggttggcgcattttacaatgtcaaagaagttggcacatatttt 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  29151467 tccgtttctggaaccctgtcgtacttacaatgtcaaaaaggttggcgcattttataatgtcaaagaagttggcgcatatttt 29151548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 26387133 - 26387198
Alignment:
Q  152 gatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcct 217  Q
    ||||||||||||||||||||||||||||  |||||||| || |||| |||||||||||||||||||    
T  26387133 gatgtgaaatctcttatgcaaatgaggttcgtatgcaagtcttggaaatctatcatttctgatcct 26387198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 43884856 - 43884896
Alignment:
Q  200 tctatcatttctgatcctaaattcgtcaaacttcaccttaa 240  Q
    ||||| ||||||||||||||||| || ||||||||||||||    
T  43884856 tctattatttctgatcctaaatttgttaaacttcaccttaa 43884896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 83 - 384
Target Start/End: Original strand, 2595112 - 2595410
Alignment:
Q  83 gttcaacccaatgcagagtcaccggtaagcctccctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtg 182  Q
    ||||||||||| |||||||  |||||||||||| || || | |||||||  |||||| |||||||||| ||||||||||| |||||||||||||| || |    
T  2595112 gttcaacccaacgcagagtttccggtaagcctctcttacgatcttatcgtcgaaatcctttccttttctgatgtgaaatcacttatgcaaatgagatgcg 2595211  T
Q  183 tatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacactaatccgagataa 282  Q
    |||||||||| |||| |||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||||||||  ||| | |||    
T  2595212 tatgcaaatcttggaaatctattatttctgatcatgaattcatcaaacttcaccttaagcgatcggcgcgaaacccttacttgacactatcccggggtaa 2595311  T
Q  283 cataggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagat 382  Q
    || ||  |  |||  | ||||||||||||||| ||||||||   | ||||||||||||| ||||||||||||||| |||||||| |||  | ||||||||    
T  2595312 cacagctagcaaatattttcccttcccggtgcatcgtttaa---tccttgagaacccgttgatcctccttccggagaacctttgctatcgatgtcaagat 2595408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 95 - 271
Target Start/End: Original strand, 2580375 - 2580551
Alignment:
Q  95 gcagagtcaccggtaagcctccctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcct 194  Q
    ||||||||||||||||||||| || |  ||||||| |  |||||| |||| |||||  |||||||||||||||||| |||||| || ||||||||||| |    
T  2580375 gcagagtcaccggtaagcctctcttatgaccttatagtcgaaatcctttcattttctaatgtgaaatctcttatgcgaatgagatgcgtatgcaaatctt 2580474  T
Q  195 ggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 271  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||  || ||||||||||||||||||||||||    
T  2580475 ggagatctatcatttctgatcctaaatttatcaaacttcaccttaagcaatcggcgcgaaacccttacttgacacta 2580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 96 - 271
Target Start/End: Original strand, 2575995 - 2576169
Alignment:
Q  96 cagagtcaccggtaagcctccctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctg 195  Q
    ||||||| ||| |||||||| || |  |||||||| | ||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||    
T  2575995 cagagtctccgataagcctctcttatgaccttatcaccgaagtc-tttcctttttcgatgtgaaaactcttatgcgaatgaggtgtgtatgcaaatcttg 2576093  T
Q  196 gagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 271  Q
    || |||||| |||||||||||||||||| | ||||||||||||||||| || || |||||||||||||||||||||    
T  2576094 gaaatctattatttctgatcctaaattcattaaacttcaccttaagcgatcggcacgaaacccttacttgacacta 2576169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 141 - 382
Target Start/End: Original strand, 2585807 - 2586044
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 240  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||| || |||| |||| || ||||| ||||||||||||||||    
T  2585807 tttccttttccgatgtgaaatctcttatgccaatgagatgtgtatgcaaatcttggaaatcaattatttttgattctgaattcatcaaacttcaccttaa 2585906  T
Q  241 gcgttccgcgcgaaacccttacttgacactaatccgagataacataggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccg 340  Q
    ||| || || ||||| ||||||||||||||| |||||| ||||||    |  | | |||||| |||   ||||| || |||||   | ||||||||||||    
T  2585907 gcgatcagcacgaaa-ccttacttgacactattccgaggtaacatccctagtagagttattctctttttggtgcatcatttaa---tccttgagaacccg 2586002  T
Q  341 tggatcctccttccggataacctttgttatgaaagtcaagat 382  Q
    | |||||||||||||||||||||||||||| || ||||||||    
T  2586003 ttgatcctccttccggataacctttgttatcaatgtcaagat 2586044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 412 - 517
Target Start/End: Original strand, 2576286 - 2576391
Alignment:
Q  412 tcgcaatgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctcaaactgtagagttctggttccgtttctgg 511  Q
    |||| |||||||||| | |||||||||||||||||||||  || ||||| || |  ||| ||| |||||| || ||| ||||||||||||||||||||||    
T  2576286 tcgctatgctattgggtcttgcaatggattgttttgtttgcttggttatactttcaatttttatgtgtctgaacctggagagttctggttccgtttctgg 2576385  T
Q  512 aaccct 517  Q
    ||||||    
T  2576386 aaccct 2576391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 418 - 545
Target Start/End: Original strand, 2586059 - 2586183
Alignment:
Q  418 tgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctcaaactgtagagttctggttccgtttctggaaccct 517  Q
    |||||||||||  |||||||||||||||||||| ||| ||||| || ||   |||| | | ||| || |||||||| ||||||||||||| |||||||||    
T  2586059 tgctattggatcctgcaatggattgttttgtttgattggttatactttt---tattccatctctaaacctgtagaggtctggttccgtttatggaaccct 2586155  T
Q  518 gtcgtacttacaatgtcaaaaaggttgg 545  Q
    ||| ||| |||||||| ||||| |||||    
T  2586156 gtcatacgtacaatgttaaaaaagttgg 2586183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 550
Target Start/End: Original strand, 2595422 - 2595546
Alignment:
Q  417 atgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctcaaactgtagagttctggttccgtttctggaaccc 516  Q
    |||||||||||| |||||||||| |||||||||| ||| ||||| ||         ||| | ||| || ||| |||||||||||||||||||||||||||    
T  2595422 atgctattggatcttgcaatggaatgttttgtttgattggttattct---------tacttatctgaacctggagagttctggttccgtttctggaaccc 2595512  T
Q  517 tgtcgtacttacaatgtcaaaaaggttggcgcat 550  Q
    |||| ||| || ||||||||||| ||||| ||||    
T  2595513 tgtcatacgtataatgtcaaaaaagttggggcat 2595546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 553
Target Start/End: Original strand, 2580767 - 2580830
Alignment:
Q  490 agagttctggttccgtttctggaaccctgtcgtacttacaatgtcaaaaaggttggcgcatttt 553  Q
    |||||| ||||||||| |||||||||||||| ||| |||||||||||||| ||||| |||||||    
T  2580767 agagttttggttccgtctctggaaccctgtcatacatacaatgtcaaaaaagttggggcatttt 2580830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 2580619 - 2580696
Alignment:
Q  303 ccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagata 383  Q
    |||||||| ||||||||||||||||    |||||||||| |||||||||||| ||||||||| ||  |||| |||||||||    
T  2580619 ccttcccgatgcgtcgtttaattctc---gagaacccgtcgatcctccttccagataaccttcgtattgaatgtcaagata 2580696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 85 - 384
Target Start/End: Original strand, 30398208 - 30398500
Alignment:
Q  85 tcaacccaatgcagagtcaccggtaagcctccctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgta 184  Q
    ||||||||| |||||||  |||||||||||     || |||||||||| |||||| ||||||||||| |||||||||||||||||| |||| | || |||    
T  30398208 tcaacccaacgcagagtttccggtaagcctt----acgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgctaatgcgatgagta 30398303  T
Q  185 tgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacactaatccgagataaca 284  Q
    ||| |||| |||| |||||| |||||||| ||| ||||||||||||||||||||||||| || ||| ||||||| ||| |||||||| || |||  ||||    
T  30398304 tgccaatcttggaaatctattatttctgaacctgaattcgtcaaacttcaccttaagcgatcggcgtgaaacccgtacatgacactattcggaggcaaca 30398403  T
Q  285 taggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagatat 384  Q
    ||    | ||| |||||||||||||||||| || |||||   |||| |||||||||| ||||||||||||| |||||| | |||||  | ||||||||||    
T  30398404 tatccgacaaaattattcccttcccggtgcatcttttaa---ttctcgagaacccgttgatcctccttccgtataaccctagttatcgatgtcaagatat 30398500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 141 - 272
Target Start/End: Original strand, 46768559 - 46768689
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 240  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| |||||||| |||| |||||| ||||| ||||||| |||  |||||||||| ||||     
T  46768559 tttccttctccgatgtgaaatctcttatgcgaatgagatgtgt-tgcaaatcttggaaatctattatttccgatcctatatttatcaaacttcatcttac 46768657  T
Q  241 gcgttccgcgcgaaacccttacttgacactaa 272  Q
    | ||||||| ||||||||||||||||||||||    
T  46768658 gtgttccgcacgaaacccttacttgacactaa 46768689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 36259410 - 36259539
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 240  Q
    |||| |||||||||||||| |  |||||||||||||| ||||||||||| || |||| |||||| ||||||||||||||||| || ||||| ||||||||    
T  36259410 tttcattttccgatgtgaagttccttatgcaaatgagatgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccaccttaa 36259509  T
Q  241 gcgttccgcgcgaaacccttacttgacact 270  Q
    ||| || ||  |||||||| ||||||||||    
T  36259510 gcgatctgcaagaaaccctcacttgacact 36259539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 271
Target Start/End: Original strand, 36254531 - 36254661
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 240  Q
    |||| ||||||||||||||||  |||||||||||||||||  | ||||| || |||| |||| | ||||| |||||||| || || ||||| ||| ||||    
T  36254531 tttcattttccgatgtgaaattccttatgcaaatgaggtgcctttgcaagtcttggaaatctctaatttccgatcctaactttgtgaaactccacattaa 36254630  T
Q  241 gcgttccgcgcgaaacccttacttgacacta 271  Q
    ||| || ||  |||||||| |||||||||||    
T  36254631 gcgatcagcaagaaaccctcacttgacacta 36254661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 36262222 - 36262342
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 240  Q
    |||| ||||| ||||| ||||  ||||||||||||||||||||||||||         |||||| ||||| |||||||  || || ||||| ||||||||    
T  36262222 tttcattttctgatgttaaattccttatgcaaatgaggtgtgtatgcaa---------atctataatttccgatcctatctttgtgaaactccaccttaa 36262312  T
Q  241 gcgttccgcgcgaaacccttacttgacact 270  Q
    ||| |||||  |||||||| ||||||||||    
T  36262313 gcgatccgcaagaaaccctcacttgacact 36262342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 35766147 - 35766321
Alignment:
Q  97 agagtcaccggtaagcctccctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctgg 196  Q
    |||||| ||||||| ||||||| |  | |||||| ||||| |  |||||||||||||||||||||||||||| |||||||  ||  | ||||| || |||    
T  35766147 agagtcgccggtaatcctccctaatgatcttatcactgaagttctttccttttccgatgtgaaatctcttatccaaatgaaatgcctttgcaagtcttgg 35766246  T
Q  197 agatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 271  Q
    |  ||||| || || ||||||||||| | |||||||||||||||||| || || | ||||||| |||||| ||||    
T  35766247 aattctataatctccgatcctaaatttgccaaacttcaccttaagcgatcagcacaaaaccctcacttgatacta 35766321  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 19353603 - 19353705
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 240  Q
    |||| ||||||||||| ||||  |||||||||||||||||||||||||| || |||| ||||||  ||||  ||||||| ||  | ||||| ||||||||    
T  19353603 tttcattttccgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctatattttccaatcctaactttttgaaactccaccttaa 19353702  T
Q  241 gcg 243  Q
    |||    
T  19353703 gcg 19353705  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 19358295 - 19358424
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 240  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||| |  || |||| |||||| |||||  ||||||| || || |||||  |||||||    
T  19358295 tttcgttttccgatgttaaattccttatgcaaatgaggtgtgtatggatctcttggaaatctataatttccaatcctaactttgtgaaactctaccttaa 19358394  T
Q  241 gcgttccgcgcgaaacccttacttgacact 270  Q
    ||| |  ||  |||||||| ||||||||||    
T  19358395 gcgatttgcatgaaaccctcacttgacact 19358424  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 19360627 - 19360716
Alignment:
Q  152 gatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcaccttaag 241  Q
    ||||||||||  || ||| ||||||||||| ||| ||| || |||| |||| | ||||||||||||||||| || |||||||||||||||    
T  19360627 gatgtgaaattcctcatgtaaatgaggtgtttatccaagtcttggaaatctctaatttctgatcctaaatttgtgaaacttcaccttaag 19360716  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 19355222 - 19355291
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcctggagatctatcatttc 210  Q
    |||| |||| |||||| ||||  |||||||||||||||||||||||||| || |||| |||||| |||||    
T  19355222 tttcatttttcgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttc 19355291  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 11240745 - 11240815
Alignment:
Q  168 tgcaaatgaggtgtgtatgcaaatcctggagatctatcatttctgatcctaaattcgtcaaacttcacctt 238  Q
    |||| ||||||||  ||||||| || |||| |||||| |||||| ||||||||||  ||||||||||||||    
T  11240745 tgcacatgaggtggatatgcaagtcttggaaatctataatttctaatcctaaatttttcaaacttcacctt 11240815  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 11240713 - 11240665
Alignment:
Q  194 tggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagc 242  Q
    |||| ||||||  |||| |||||||||||||| ||||||||||||||||    
T  11240713 tggaaatctatagtttcagatcctaaattcgtgaaacttcaccttaagc 11240665  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 19356700 - 19356748
Alignment:
Q  141 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaa 189  Q
    |||| ||||||| ||| ||||  ||||||||||||||||||||||||||    
T  19356700 tttcattttccggtgttaaattccttatgcaaatgaggtgtgtatgcaa 19356748  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 21621308 - 21621218
Alignment:
Q  85 tcaacccaatgcagagtcaccggtaagcctccctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatg 175  Q
    ||||||||| |||||||  |||||||||||| || || |||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  21621308 tcaacccaacgcagagtttccggtaagcctctcttacgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgcgaatg 21621218  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 21642978 - 21642888
Alignment:
Q  85 tcaacccaatgcagagtcaccggtaagcctccctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatg 175  Q
    ||||||||| |||||||  |||||||||||| || || |||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  21642978 tcaacccaacgcagagtttccggtaagcctctcttacgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgcgaatg 21642888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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