View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_11 (Length: 380)
Name: NF2159_low_11
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_11 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 6444486 - 6444363
Alignment:
| Q |
26 |
gtgtgaaaaaggacaggaccactctctaagtagaaa----atcatgtgcctacgatcagtgtttgtttgttggaaatgtcacagtggacattgcagtgca |
121 |
Q |
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| T |
6444486 |
gtgtgacaaaggacaggaccactctctaagtagaaagaaaatcatgtgcatacgatcagtgtttgtttgttggaaatgtcacagtggacattgcagtgca |
6444387 |
T |
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| Q |
122 |
aactggtttcacacagaagaacta |
145 |
Q |
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| T |
6444386 |
aactggtttcacacacaagaacta |
6444363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 6444349 - 6444259
Alignment:
| Q |
173 |
tagaaaatcatgttgcgtgaccactaaaataatattttcctgttcttctcaacccattcattcaggccccgccaccaagtaggaggtgaaaaataatcta |
272 |
Q |
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| T |
6444349 |
tagaaaatcatgttgcgtgaccactaaaataatattttcctgttcttctcaa---------------cccgccaccaagtaggaggtgaaaaataatcta |
6444265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 289
Target Start/End: Original strand, 29731252 - 29731343
Alignment:
| Q |
194 |
cactaaaataatattttcctgttcttctcaacccattcattcaggccccgccaccaagtaggaggtgaaaaataatctaagattagttgtgttatg |
289 |
Q |
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| T |
29731252 |
cactaaaataatatttttctgttcttctcaacccatt----caggccccgccaccaaggaggaggtgagaaataatccatgattaattgtgttatg |
29731343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 6653800 - 6653707
Alignment:
| Q |
190 |
tgaccactaaaataatattttcctgttcttctcaacccattcattcaggccccgccaccaagtaggaggtgaaaaataatctaagattagttgtgtta |
287 |
Q |
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| T |
6653800 |
tgaccattaaaataatatttttcagttcttctcaacccattca----ggccccgccactaaggaggaggtgaaaaataatccatgattaattgtgtta |
6653707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 6734200 - 6734107
Alignment:
| Q |
190 |
tgaccactaaaataatattttcctgttcttctcaacccattcattcaggccccgccaccaagtaggaggtgaaaaataatctaagattagttgtgtta |
287 |
Q |
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| T |
6734200 |
tgaccattaaaataatatttttcagttcttctcaacccattca----ggccccgccacaaaggaggaggtgaaaaataatccatgattaattgtgtta |
6734107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 146177 - 146138
Alignment:
| Q |
341 |
attaatgaaaccaaatcaagcacagcacctatgcttatat |
380 |
Q |
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| T |
146177 |
attaatgaacccaaatcaagcacagcacctatgcttatat |
146138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 137717 - 137678
Alignment:
| Q |
341 |
attaatgaaaccaaatcaagcacagcacctatgcttatat |
380 |
Q |
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| T |
137717 |
attaatgaaaccaaatcaagaacagcacctatacttatat |
137678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 24895995 - 24895961
Alignment:
| Q |
341 |
attaatgaaaccaaatcaagcacagcacctatgct |
375 |
Q |
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| T |
24895995 |
attaatgaaaccaaatcaagcacagcacctatgct |
24895961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 24908227 - 24908193
Alignment:
| Q |
341 |
attaatgaaaccaaatcaagcacagcacctatgct |
375 |
Q |
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| T |
24908227 |
attaatgaaaccaaatcaagcacaacacctatgct |
24908193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 24985762 - 24985728
Alignment:
| Q |
341 |
attaatgaaaccaaatcaagcacagcacctatgct |
375 |
Q |
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| T |
24985762 |
attaatgaaaccaaatcaagcacaacacctatgct |
24985728 |
T |
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