View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_12 (Length: 367)
Name: NF2159_low_12
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 8332661 - 8332315
Alignment:
| Q |
11 |
ttattctcacacgtattactctaacaacacaaatattacatgtgatttccaaattatcatgttcaattcaacactattccaaagcatgcttatcaatctg |
110 |
Q |
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| T |
8332661 |
ttattctcacacgtattactctaacaacacaacaattacatgtgatttccaaattatcatgttcaatccaacactattccaaagcatgcttatcaatctg |
8332562 |
T |
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| Q |
111 |
atctgaaatacacatatgctttacacaatatgacaatttaacataataaatattatnnnnnnnnntaaaata---ttggtttcttttcaatcaaactaca |
207 |
Q |
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| T |
8332561 |
atctgaactacacatatgctttacacaatatgacaatttaacataataaatattataaaaaaaaataaaaaaaaatcggtttcttttcaatcaaactaca |
8332462 |
T |
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| Q |
208 |
aaggacaaggagcatacaaacaaaactttacatccagtacgaatatttattgataaaaataaaattacaactccaaactatttactataaatacatcatc |
307 |
Q |
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| T |
8332461 |
aaggacaaggagcatacaaataaaactttacatccagtacgaatatttattaataaaaataaaattacaactccaaactatttactataaatacatcatc |
8332362 |
T |
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| Q |
308 |
aatcattaagcatacaacattttccattcacaatggaatcctgttct |
354 |
Q |
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| T |
8332361 |
aatcattaagcatacaacattttccattcacaatggaatcctgttct |
8332315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 177 - 354
Target Start/End: Original strand, 40770587 - 40770764
Alignment:
| Q |
177 |
aaaatattggtttcttttcaatcaaactacaaaggacaaggagcatacaaacaaaactttacatccagtacgaatatttattgataaaaataaaattaca |
276 |
Q |
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| T |
40770587 |
aaaaaattggtttcttttcaatcaaactacaaaggataaggagcatacaaacaaaactttacatccagtacgaatatttattaataaaaataaaattaca |
40770686 |
T |
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| Q |
277 |
actccaaactatttactataaatacatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttct |
354 |
Q |
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| T |
40770687 |
acttcaaactatttactataaatacatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttct |
40770764 |
T |
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