View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_13 (Length: 359)
Name: NF2159_low_13
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 40088907 - 40089220
Alignment:
| Q |
10 |
aatatgccccctttaaatgcctcaaaatataagtttaattaaaaggaacaccagttccacattacatgatgttataattggattattttatacatgatta |
109 |
Q |
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| T |
40088907 |
aatatgcaccctttaaatgcctcaaaatataagtttaattaaaaggaacaacagttccacattacatgatgttatgattggattattttatgcatgatta |
40089006 |
T |
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| Q |
110 |
atgattaatagtaacagcttgagaaaattccttgaaacatgattttaacaatgaaagttatcactcttgtgttactgtaagatcagattataacttgtca |
209 |
Q |
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| T |
40089007 |
atgattaatagtaacagcttgagaaaattccttgaaacatgattttaacaatgaaagttatcactcttgtgttactgtaagatcagattataacttgtca |
40089106 |
T |
|
| Q |
210 |
aactcgagagtctatgtaaactatatgtgaggcctccgtaggctcgactcataagcgt--ctacctaatacataattacattcaagtacaatacaataca |
307 |
Q |
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| T |
40089107 |
aactcgagagtctatgtaaactatatgtgaggcctccgtaggctcgactcataagcgtacctacctaatacataattacattcaagtacaatacaataca |
40089206 |
T |
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| Q |
308 |
tataccattaacat |
321 |
Q |
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|||||||||||||| |
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| T |
40089207 |
tataccattaacat |
40089220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 6910490 - 6910563
Alignment:
| Q |
26 |
atgcctcaaaatataagtttaattaaaaggaacaccagttccacattacatgatgttataattggattattttatac |
102 |
Q |
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| T |
6910490 |
atgcctcaaaatatcagtttac---aaaggaacaccagttctacattacatgacgttataattgaattatattatac |
6910563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 30947968 - 30947908
Alignment:
| Q |
51 |
aaaggaacaccagttccacattacatgatgttataattggattattttatacatgattaat |
111 |
Q |
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| T |
30947968 |
aaaggaacaccagttctgcattacacaaagttataattggattgtattatacatgattaat |
30947908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 25468046 - 25468074
Alignment:
| Q |
50 |
aaaaggaacaccagttccacattacatga |
78 |
Q |
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| T |
25468046 |
aaaaggaacaccagttccacattacatga |
25468074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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