View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2159_low_14 (Length: 275)

Name: NF2159_low_14
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2159_low_14
NF2159_low_14
[»] chr5 (5 HSPs)
chr5 (168-260)||(13457801-13457893)
chr5 (18-105)||(13457651-13457738)
chr5 (171-260)||(31233515-31233604)
chr5 (32-91)||(31233686-31233745)
chr5 (47-105)||(17532542-17532601)
[»] chr2 (1 HSPs)
chr2 (171-260)||(24453898-24453987)
[»] chr3 (3 HSPs)
chr3 (171-260)||(23233779-23233869)
chr3 (186-260)||(33330644-33330718)
chr3 (55-89)||(33330555-33330589)
[»] chr7 (3 HSPs)
chr7 (47-105)||(14806112-14806171)
chr7 (47-105)||(15253106-15253165)
chr7 (58-104)||(2599569-2599615)
[»] chr6 (2 HSPs)
chr6 (171-239)||(27174346-27174414)
chr6 (171-239)||(27231151-27231219)
[»] chr8 (1 HSPs)
chr8 (18-54)||(32149782-32149818)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 13457801 - 13457893
Alignment:
Q  168 cgatatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcattt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13457801 cgatatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtcttccaatatatcattt 13457893  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 13457651 - 13457738
Alignment:
Q  18 aggcacggaggagatttgtagaaattgacttagtattccttagtattttcagttatgatattattaagttttttatagacattagtga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13457651 aggcacggaggagatttgtagaaattgacttagtattccttagtattttcagttatgatattattaagttttttatagacattagtga 13457738  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 31233604 - 31233515
Alignment:
Q  171 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcattt 260  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||    
T  31233604 tatgtttcagctctatttataaagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttttgtctacaaatatatcattt 31233515  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 31233745 - 31233686
Alignment:
Q  32 tttgtagaaattgacttagtattccttagtattttcagttatgatattattaagtttttt 91  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  31233745 tttgtagaaattgccttagtattctttagtatttgcagttatgatattattaagtttttt 31233686  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 17532542 - 17532601
Alignment:
Q  47 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  17532542 ttagtatgccttagtattttcagttatgatattaataagttttttatgagacattagtga 17532601  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 24453898 - 24453987
Alignment:
Q  171 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcattt 260  Q
    ||||||| |||||||||||||||| |||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  24453898 tatgttttagctctatttatagagtactgaactatttgtaatggtatgtttgatgttataaacatatttctgtctttcaatataacattt 24453987  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 23233869 - 23233779
Alignment:
Q  171 tatgtttcagctctatttatagagcactgaagtgtt-tgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcattt 260  Q
    |||||||||||||||||||||| ||||| |||| || |||||||||||| |||||||||||||| ||||||||||||  ||||||||||||    
T  23233869 tatgtttcagctctatttatagggcactaaagtattgtgtaatggtgtgtttgatgttataaacttatttctgtcttctaatatatcattt 23233779  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 33330644 - 33330718
Alignment:
Q  186 tttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcattt 260  Q
    |||| |||||| |||||||||||||| | || | ||||||||||||||||||||||||||| | |||| ||||||    
T  33330644 tttacagagcagtgaagtgtttgtaaggatgagtttgatgttataaacatatttctgtcttccgatatgtcattt 33330718  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 33330555 - 33330589
Alignment:
Q  55 ccttagtattttcagttatgatattattaagtttt 89  Q
    |||||||||||||||||||||||||| ||||||||    
T  33330555 ccttagtattttcagttatgatattaataagtttt 33330589  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 14806171 - 14806112
Alignment:
Q  47 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 105  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  14806171 ttagtatgccttagtattttcagttatgatactaataagttttttatgagacattagtga 14806112  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 15253165 - 15253106
Alignment:
Q  47 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 105  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  15253165 ttagtatgccttagtattttcagttatgatactaataagttttttatgagacattagtga 15253106  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 2599569 - 2599615
Alignment:
Q  58 tagtattttcagttatgatattattaagttttttatagacattagtg 104  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||    
T  2599569 tagtattttcagttatgatattattatgtttttaagagacattagtg 2599615  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 27174346 - 27174414
Alignment:
Q  171 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatattt 239  Q
    ||||||| ||||||||||||| |||| ||||||||||||||  ||| |||||||||||| || ||||||    
T  27174346 tatgtttgagctctatttatatagcagtgaagtgtttgtaagagtgagcttgatgttatcaaaatattt 27174414  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 27231151 - 27231219
Alignment:
Q  171 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatattt 239  Q
    ||||||| ||||||||||||| |||| ||||||||||||||  ||| |||||||||||| || ||||||    
T  27231151 tatgtttgagctctatttatatagcagtgaagtgtttgtaagagtgagcttgatgttatcaaaatattt 27231219  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 32149782 - 32149818
Alignment:
Q  18 aggcacggaggagatttgtagaaattgacttagtatt 54  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  32149782 aggcaaggaggagatttgtagaaattgccttagtatt 32149818  T

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