View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_17 (Length: 258)
Name: NF2159_low_17
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5304217 - 5303976
Alignment:
| Q |
1 |
tgacttctatcatatgcaggtatccaaattaattaaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatttgt |
100 |
Q |
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| T |
5304217 |
tgacttctatcatatgcaggtatccaaattagttaaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatttgt |
5304118 |
T |
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| Q |
101 |
gaatgactactactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagct |
200 |
Q |
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| T |
5304117 |
gaatgactactactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagct |
5304018 |
T |
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| Q |
201 |
acaagtctttacaaagggaaggaattttatattggtcctcat |
242 |
Q |
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| T |
5304017 |
acaagtctttacaaagggaaggaattttatattggtcctcat |
5303976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 29224420 - 29224292
Alignment:
| Q |
114 |
tgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtctttaca |
213 |
Q |
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| T |
29224420 |
tgcagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtctttaca |
29224321 |
T |
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| Q |
214 |
aagggaaggaattttatattggtcctcat |
242 |
Q |
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| T |
29224320 |
aagggaaggaattttatattggtcatcat |
29224292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 29147264 - 29147395
Alignment:
| Q |
111 |
tactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtcttt |
210 |
Q |
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| T |
29147264 |
tactacagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtcttt |
29147363 |
T |
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| Q |
211 |
acaaagggaaggaattttatattggtcctcat |
242 |
Q |
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| T |
29147364 |
acaaagggaaggaattttatattggtcatcat |
29147395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 38852015 - 38851889
Alignment:
| Q |
108 |
tactactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtc |
207 |
Q |
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||||| ||||||||||||||||||| ||| |||||| ||||||||||||| || | ||||||||||||||||||| |||| |||||||| |||| | |
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| T |
38852015 |
tactattgcagaatggagaatttgaacattcacacatggaatggtagagctaagtgtgtcggggcaattttgtgtgttgctggaacattagctgcaagac |
38851916 |
T |
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| Q |
208 |
tttacaaagggaaggaattttatattg |
234 |
Q |
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| T |
38851915 |
tatacaaaggaaaggagttttacattg |
38851889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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