View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_19 (Length: 241)
Name: NF2159_low_19
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 28216246 - 28216069
Alignment:
| Q |
36 |
ttttagttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt |
135 |
Q |
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| T |
28216246 |
ttttatttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt |
28216147 |
T |
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| Q |
136 |
ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatcttacggtta |
213 |
Q |
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| T |
28216146 |
ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatctcacggtta |
28216069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Complemental strand, 28216048 - 28216017
Alignment:
| Q |
210 |
gttataaaaagaaaatgaggagattcttcatc |
241 |
Q |
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| T |
28216048 |
gttataaaaagaaaatgaggagattcttcatc |
28216017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 21453239 - 21453277
Alignment:
| Q |
42 |
ttttcattaggtagctcatccttatgatgagtgagtagt |
80 |
Q |
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| T |
21453239 |
ttttcattgggtagctcatccttgtgatgagtgagtagt |
21453277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 26774263 - 26774304
Alignment:
| Q |
42 |
ttttcattaggtagctcatccttatgatgagtgagtagttcc |
83 |
Q |
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| T |
26774263 |
ttttcactacgtagttcatccttatgatgagtgagtagttcc |
26774304 |
T |
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