View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2159_low_2 (Length: 531)

Name: NF2159_low_2
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2159_low_2
NF2159_low_2
[»] chr8 (2 HSPs)
chr8 (221-423)||(12844309-12844508)
chr8 (26-213)||(16737016-16737198)
[»] scaffold0014 (3 HSPs)
scaffold0014 (363-493)||(178576-178705)
scaffold0014 (26-151)||(178884-179009)
scaffold0014 (363-495)||(188046-188162)
[»] chr6 (2 HSPs)
chr6 (26-159)||(22599370-22599503)
chr6 (57-106)||(2408040-2408089)
[»] chr4 (4 HSPs)
chr4 (47-150)||(22141738-22141841)
chr4 (47-150)||(22153652-22153755)
chr4 (426-493)||(49890541-49890608)
chr4 (57-142)||(47876383-47876466)
[»] chr3 (6 HSPs)
chr3 (26-141)||(20434050-20434165)
chr3 (26-141)||(20447976-20448091)
chr3 (437-495)||(27872913-27872971)
chr3 (437-486)||(16016855-16016904)
chr3 (213-262)||(16017145-16017194)
chr3 (215-262)||(27872624-27872671)
[»] chr1 (1 HSPs)
chr1 (26-141)||(13958001-13958116)
[»] scaffold0560 (1 HSPs)
scaffold0560 (437-493)||(9475-9531)
[»] chr7 (2 HSPs)
chr7 (123-213)||(23444018-23444102)
chr7 (26-88)||(23443953-23444011)
[»] scaffold0634 (1 HSPs)
scaffold0634 (392-438)||(6455-6501)
[»] scaffold0130 (1 HSPs)
scaffold0130 (392-438)||(26156-26202)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 221 - 423
Target Start/End: Original strand, 12844309 - 12844508
Alignment:
Q  221 ttttgcaacacagaaattcatcaatcaaaaactacaattctctaaacacctcaaaacaacatttttcaatctattttcacaacacaacaaatcaacatca 320  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  12844309 tttttcaacagagaaattcatcaatcaaaacctacaattctctaa-cacctcaaaacaacatttt-caatctattt-cacaacacaacaaatcatcatca 12844405  T
Q  321 ccgattccaaaaccttttttctttaacgcatattcaatcaacaaccccattcacaaacatcaaaacctgcaacacaaatccaaacctgtttcaaactaac 420  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  12844406 ccgattccaaaaccttttttctttaacacgtattcaatcaacaacctcattcacaatcatcaaaacctgcagcacaaatccaaacctgtctcaaactaac 12844505  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 16737016 - 16737198
Alignment:
Q  26 gttccaatccacacagttgtagccagcccattcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatcc 125  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||    
T  16737016 gttccaatccacacagttgtcgccagcccattcatgtccccttaatcccaagccaaggcagttactgtctgtcttttaacaagttccatgtctccaatcc 16737115  T
Q  126 agttctataaatacaacacacaaaccgggcaaaaggaaggaggagaagaacaagagccaaaatcaaaaaacaagctcaaacacactag 213  Q
    |||||||||||||||  ||||||||| |||||||  ||  | || || |||||||||||||||| ||||||| |||||||||||||||    
T  16737116 agttctataaataca--acacaaaccaggcaaaa--aaaaaagacaacaacaagagccaaaatc-aaaaacacgctcaaacacactag 16737198  T

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Target: scaffold0014 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 363 - 493
Target Start/End: Complemental strand, 178705 - 178576
Alignment:
Q  363 aaccccattcacaaacatcaaaacctgcaacacaaatccaaacctgtttcaaactaacaacaaccaatcgtccaagcaagctacaaaaaccggccgaaac 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  178705 aaccccattcacaaacatcaaaacctgcaacacaaatccaaacctgtctcaaactaacaacaaccaatcgttcaa-caagctacaaaaaccggccgaaac 178607  T
Q  463 cctttcaaacacataacaaccaatttctttt 493  Q
    |||||||||||||||||||||||||||||||    
T  178606 cctttcaaacacataacaaccaatttctttt 178576  T

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Target: scaffold0014; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 179009 - 178884
Alignment:
Q  26 gttccaatccacacagttgtagccagcccattcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatcc 125  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  179009 gttccaatccacacagctgtcgccagcccattcatgtccccttaatcccaagccaaggcagttactgtctgtcctttaacaggttccatgtctccaatcc 178910  T
Q  126 agttctataaatacaacacacaaacc 151  Q
    ||||||||||||||||||||||||||    
T  178909 agttctataaatacaacacacaaacc 178884  T

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Target: scaffold0014; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 363 - 495
Target Start/End: Complemental strand, 188162 - 188046
Alignment:
Q  363 aaccccattcacaaacatcaaaacctgcaacacaaatccaaacctgtttcaaactaacaacaaccaatcgtccaagcaagctacaaaaaccggccgaaac 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||                |||||||||||||    
T  188162 aaccccattcacaaacatcaaaacctgcaacacaaatccaaacctgtctcaaactaacaacaaccaatcgt----------------aaccggccgaaac 188079  T
Q  463 cctttcaaacacataacaaccaatttcttttcc 495  Q
    |||||||||||||||||||||||||||||||||    
T  188078 cctttcaaacacataacaaccaatttcttttcc 188046  T

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Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 22599503 - 22599370
Alignment:
Q  26 gttccaatccacacagttgtagccagcccattcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatcc 125  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||||    
T  22599503 gttccaatccacacagctgtcgccagcccattcatgtccccttaatcccaagccaaggcagttactgtctgtcctttaacaagctccatgtctccaatcc 22599404  T
Q  126 agttctataaatacaacacacaaaccgggcaaaa 159  Q
    || ||||||||||||||||||||||| |||||||    
T  22599403 agctctataaatacaacacacaaaccaggcaaaa 22599370  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 2408040 - 2408089
Alignment:
Q  57 tcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaaca 106  Q
    ||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  2408040 tcatgtccccttaatcccaagccaaggcaattcttgtctgtcctttaaca 2408089  T

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Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 22141841 - 22141738
Alignment:
Q  47 gccagcccattcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatccagttctataaatacaacacac 146  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22141841 gccagctcattcatgtccccttaatcccaagccaaggcagttcctgtctgtcctttaacaggttccatgtctcccatccagttctataaatacaacacac 22141742  T
Q  147 aaac 150  Q
    ||||    
T  22141741 aaac 22141738  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 22153755 - 22153652
Alignment:
Q  47 gccagcccattcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatccagttctataaatacaacacac 146  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22153755 gccagctcattcatgtccccttaatcccaagccaaggcagttcctgtctgtcctttaacaggttccatgtctcccatccagttctataaatacaacacac 22153656  T
Q  147 aaac 150  Q
    ||||    
T  22153655 aaac 22153652  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 49890541 - 49890608
Alignment:
Q  426 ccaatcgtccaagcaagctacaaaa-accggccgaaaccctttcaaacacataacaaccaatttctttt 493  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||    
T  49890541 ccaatcgtcca-gcaagctacgaaagaccggccgaaaccctttcaagcacataacaaccaacttctttt 49890608  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 47876383 - 47876466
Alignment:
Q  57 tcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatccagttctataaatacaac 142  Q
    ||||||||||| ||||||||||||| ||| || ||||| ||||||||||| |||||| |||| |||||| |  |||||||||||||    
T  47876383 tcatgtcccct-aatcccaagccaaggcaatttctgtcggtcctttaacaagttccaagtct-caatcctggcctataaatacaac 47876466  T

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Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 20434050 - 20434165
Alignment:
Q  26 gttccaatccacacagttgtagccagcccattcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatcc 125  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  20434050 gttccaatccacacagctgtcgccagcccattcatgtccccttaatcccaagccaaggcagttgctgtctgtccttcaacaagttccatgtctccaatcc 20434149  T
Q  126 agttctataaatacaa 141  Q
    ||||||||||||||||    
T  20434150 agttctataaatacaa 20434165  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 20447976 - 20448091
Alignment:
Q  26 gttccaatccacacagttgtagccagcccattcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatcc 125  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  20447976 gttccaatccacacagctgtcgccagcccattcatgtccccttaatcccaagccaaggcagttgctgtctgtccttcaacaagttccatgtctccaatcc 20448075  T
Q  126 agttctataaatacaa 141  Q
    ||||||||||||||||    
T  20448076 agttctataaatacaa 20448091  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 27872913 - 27872971
Alignment:
Q  437 agcaagctacaaaaaccggccgaaaccctttcaaacacataacaaccaatttcttttcc 495  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  27872913 agcaagctacaaaaaccggccgaaatcctttcaaacccataaaaaccaatttcttttcc 27872971  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 16016904 - 16016855
Alignment:
Q  437 agcaagctacaaaaaccggccgaaaccctttcaaacacataacaaccaat 486  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  16016904 agcaagctacaaaaaccggccgaaaccctttcaaacccataaaaaccaat 16016855  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 16017194 - 16017145
Alignment:
Q  213 gaggggaattttgcaacacagaaattcatcaatcaaaaactacaattctc 262  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||||||    
T  16017194 gaggggaatttttcaacacagaaattcatcaatcaaaacctgcaattctc 16017145  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 27872624 - 27872671
Alignment:
Q  215 ggggaattttgcaacacagaaattcatcaatcaaaaactacaattctc 262  Q
    |||||||||| ||||||| ||||||||||||||||| || ||||||||    
T  27872624 ggggaatttttcaacacataaattcatcaatcaaaacctgcaattctc 27872671  T

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Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 13958116 - 13958001
Alignment:
Q  26 gttccaatccacacagttgtagccagcccattcatgtccccttaatcccaagccaacgcagttcctgtctgtcctttaacaggttccatgtctccaatcc 125  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  13958116 gttccaatccacacagctgtcgccagcccattcatgtccccttaatcccaagccaaggcagttgctgtctgtccttcaacaagttccatgtctccaatcc 13958017  T
Q  126 agttctataaatacaa 141  Q
    ||||||||||||||||    
T  13958016 agttctataaatacaa 13958001  T

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Target: scaffold0560 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 9475 - 9531
Alignment:
Q  437 agcaagctacaaaaaccggccgaaaccctttcaaacacataacaaccaatttctttt 493  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  9475 agcaagctgcaaaaaccggccgaaaccctttcaaacacataacaaccaacttctttt 9531  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 23444018 - 23444102
Alignment:
Q  123 tccagttctataaatacaacacacaaaccgggcaaaaggaaggaggagaagaacaagagccaaaatcaaaaaacaagctcaaacacactag 213  Q
    ||||||||||||||||||||||||||||| | |||||     || || || ||||||||||||||| |||||||  |||||||||||||||    
T  23444018 tccagttctataaatacaacacacaaaccagtcaaaa-----gaagacaataacaagagccaaaat-aaaaaacgcgctcaaacacactag 23444102  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 23443953 - 23444011
Alignment:
Q  26 gttccaatccacacagttgtagccagcccattcatgtccccttaatcccaagccaacgcagtt 88  Q
    |||||||||||||||| ||| ||||||||||    ||||||||||||||||||||| ||||||    
T  23443953 gttccaatccacacagctgtcgccagcccat----gtccccttaatcccaagccaaggcagtt 23444011  T

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Target: scaffold0634 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 6501 - 6455
Alignment:
Q  392 acacaaatccaaacctgtttcaaactaacaacaaccaatcgtccaag 438  Q
    ||||||||| |||||||| ||||||||||||||||||| || |||||    
T  6501 acacaaatcaaaacctgtctcaaactaacaacaaccaaccggccaag 6455  T

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Target: scaffold0130 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 26156 - 26202
Alignment:
Q  392 acacaaatccaaacctgtttcaaactaacaacaaccaatcgtccaag 438  Q
    ||||||||| |||||||| ||||||||||||||||||| || |||||    
T  26156 acacaaatcaaaacctgtctcaaactaacaacaaccaaccggccaag 26202  T

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