View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_24 (Length: 215)
Name: NF2159_low_24
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 7089141 - 7088956
Alignment:
| Q |
14 |
attattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtctttg |
113 |
Q |
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| T |
7089141 |
attattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtcttcg |
7089042 |
T |
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| Q |
114 |
cttccatcgagttgcaagttgcaacaaaaggttcatatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagt |
199 |
Q |
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| T |
7089041 |
cttccatcgagttgcaagttgcaacaaaaggttcatatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagt |
7088956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 7668484 - 7668296
Alignment:
| Q |
14 |
attattctactgtttacttgatcattaagcaatg-aacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtcttt |
112 |
Q |
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| T |
7668484 |
attattctagtgcttagttgatcattaagcaaaataacaggtctaattttctcggcaccaagttcacgatcttggatggtcatcctccacatgtttcttc |
7668385 |
T |
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| Q |
113 |
gcttccatcgagttgcaagttgcaacaaaaggttc--atatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagt |
199 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||| |||||||||| |||||| ||||||||| |
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| T |
7668384 |
gcttccatcgagttgcaagttgcaacaaaaggtccatatatgaagcaagtatttcctagggttgctcctgctactgctagctataaagt |
7668296 |
T |
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