View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_3 (Length: 522)
Name: NF2159_low_3
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 7102104 - 7102577
Alignment:
| Q |
1 |
acttttttctacaaacttttgatgtcaacttaaaatgtagacgatgtgttccaatacttaaatttaaaaataaacaccataatctttcnnnnnnnnnnnn |
100 |
Q |
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| T |
7102104 |
acttttttttacaaacttttgatgtcaacttaaaatgtagacgatgtgttccaatacttaaatttaaaaataaacaccataatctttcaaaaaaaaaaaa |
7102203 |
T |
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| Q |
101 |
nnnnnnn---tatacacagttatggccgcaacccaatttgttatagtttattatccttcatccaccaatttggtcgcagattaatcccctcatttttagc |
197 |
Q |
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| T |
7102204 |
agtaaaaaaatatacatcgttatggccgcaacccaatttgttatagtttattatccttcatccaccaatttggtcgcagatcaatcccctcattt----- |
7102298 |
T |
|
| Q |
198 |
aaatttgtattgtacgaatatagtctattaatttaaatgaatatcatttatttttaaacgctatatgctaacnnnnnnnnnagacactagaacattctgc |
297 |
Q |
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| T |
7102299 |
------gtattgtatcaatatagtctattaatttaaatgaatatcatttatttttaaacgctatatgctaacttttttt--agataccggaacattctgc |
7102390 |
T |
|
| Q |
298 |
atcacttcacttatttgtacattttagaacttaaattttacaaagcataa-caataggaagtgtagagagggtgtaagaaaaataggggatgcaaatagt |
396 |
Q |
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| T |
7102391 |
atcacttcacttatttgtacattttagaacttaaattttacaaagcataaacaata--------------------agaaaaataggggatgcaaatagt |
7102470 |
T |
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| Q |
397 |
aatttaatgcacacatatgaaaagcataaaaagcccaattgagaaaggaatatcaaagctgggccttgaaactgagttcatcttcaatctcctcacagaa |
496 |
Q |
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| T |
7102471 |
aatttaatgcacacatatgaaaagcataaaaagcccaattgagaaaggaatatcaaagctgggccttgaaactgagttcatcttcaatctcctcacagaa |
7102570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 12524399 - 12524349
Alignment:
| Q |
189 |
atttttagcaaatttgtattgtacgaatatagtctattaatttaaatgaat |
239 |
Q |
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| T |
12524399 |
atttttagcgaatttgtattgtttgaatataatctatcaatttaaatgaat |
12524349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 51742184 - 51742245
Alignment:
| Q |
190 |
tttttagcaaatttgtattgtacgaatatagtctattaatttaaatgaatatcatttatttt |
251 |
Q |
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| T |
51742184 |
tttttggcgaatttgtattgtatcaatatactctatcaatttgaatgaatatcattaatttt |
51742245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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