View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_6 (Length: 491)
Name: NF2159_low_6
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 491
Target Start/End: Complemental strand, 12945373 - 12944899
Alignment:
| Q |
17 |
acatagcctatttcgcaggtctacgtgctcttgacgttgatctctctcccattaaaatccgagggatcataatgaaatatccattttttagtggggtcca |
116 |
Q |
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| T |
12945373 |
acatagcctatttcgcaggtctacgtgctctcgaccttgatctctctcacattaaaatccgagggatcataatgaaatatccattttttagtggggtcca |
12945274 |
T |
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| Q |
117 |
aagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagcaggtgatctcatgtggtccctgtgtttgcctgagggcaaagacagg |
216 |
Q |
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| T |
12945273 |
gagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagcaggtgacctcatgtggttcctatgtttgcccgagggcaaagacagg |
12945174 |
T |
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| Q |
217 |
gaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagataggacggttgccaaggtgttttgtaaatggctacggtggtgatccat |
316 |
Q |
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| T |
12945173 |
gaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagattggacggttgccaaggtgctttgttaatggctacggtggagatccat |
12945074 |
T |
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| Q |
317 |
tggtggataagcaaaaggagctggcgaagatttttgcagcacgcggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctt |
416 |
Q |
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| T |
12945073 |
tggtggataagcagaaggagctggcgaagattttggcggcacgtggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctt |
12944974 |
T |
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| Q |
417 |
tgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttatactctctgctgtctctgctcctcctca |
491 |
Q |
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| T |
12944973 |
tgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttatactctctgctgtttctgttgctcctca |
12944899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 12937701 - 12937254
Alignment:
| Q |
17 |
acatagcctatttcgcaggtctacgtgctcttgacgttgatctctctcccattaaaatccgagggatcataatgaaatatccattttttagtggggtcca |
116 |
Q |
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||||||| || |||||||||||||||||||||||| | ||||||||||| |||| |||| |||| | |||||||| ||| |||||| ||||||| || |
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| T |
12937701 |
acatagcgtacttcgcaggtctacgtgctcttgacctcgatctctctcctcttaagatccaagggcttataatgaatgctccgttttttggtggggttca |
12937602 |
T |
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| Q |
117 |
aagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagcaggtgatctcatgtggtccctgtgtttgcctgagggcaaagacagg |
216 |
Q |
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| T |
12937601 |
gagaacaaaatctgagcttcgtttcattaacgataatatactacccttatcagcaagtgatctcatgtgggccctatctttgcctgagggtacagatcgg |
12937502 |
T |
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| Q |
217 |
gaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagataggacggttgccaaggtgttttgtaaatggctacggtggtgatccat |
316 |
Q |
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| T |
12937501 |
gatcacgtgtattgtaatccaaaagtttcggatgtgatacatggtgagaagatcggacggctgccgaggtgctttgttaacggctacggtggggatccct |
12937402 |
T |
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| Q |
317 |
tggtggataagcaaaaggagctggcgaagatttttgcagcacgcggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctt |
416 |
Q |
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| T |
12937401 |
tggtggataggcaaaaggagctagtgaagattttggaggcacgtggggtgcacgtggagtctgttttttgtgaggatgggtttcatgctgtggaactctt |
12937302 |
T |
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| Q |
417 |
tgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttat |
464 |
Q |
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| T |
12937301 |
tgatcctgctaaggcacaagcattacttgattacgttaagaaatttat |
12937254 |
T |
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