View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2159_low_7 (Length: 429)
Name: NF2159_low_7
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2159_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 23407892 - 23408093
Alignment:
| Q |
1 |
caagaacaaatttactagtttgaacaatgtgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttccttctaagctcacct |
100 |
Q |
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| T |
23407892 |
caagaacaaatttactagtttgaacaatgtgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttctttctaagctcacct |
23407991 |
T |
|
| Q |
101 |
ctgaactttcatgtatatattttgtatcagatgtgtttgtgcttacagacaaaggatataagcttatcaaattctaattctcagtcaaattacaaaataa |
200 |
Q |
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| T |
23407992 |
ctgaactttcatgtatatattttgtatcagatgtgtttgtgcttaaagacaaaggatataagcttatcaaattctaattctcagtcaaattacaaaataa |
23408091 |
T |
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| Q |
201 |
ta |
202 |
Q |
| |
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|| |
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| T |
23408092 |
ta |
23408093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 212 - 346
Target Start/End: Original strand, 23408192 - 23408326
Alignment:
| Q |
212 |
gtccacttataattaaacatatagcagatatcttctgcagaattacagcaaaaaacatccttaattttgcatctaagccaagatcaaattacagtgtcaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23408192 |
gtccacttataattaaacatatagcagatatcttctgcacaattacagcaaaaaacatccttaattttgcatctcagccaagatcaaattacagtgtcag |
23408291 |
T |
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| Q |
312 |
taaaattgattaattataaacaatcacaatccaca |
346 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
23408292 |
taaaattgattaattataaacaatcacaacccaca |
23408326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 23408328 - 23408360
Alignment:
| Q |
381 |
aggaggaatccaactatattttatgagaaaatg |
413 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23408328 |
aggaggaatccaactatattttatgagaaaatg |
23408360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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