View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2159_low_8 (Length: 423)

Name: NF2159_low_8
Description: NF2159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2159_low_8
NF2159_low_8
[»] chr2 (3 HSPs)
chr2 (102-321)||(8926113-8926340)
chr2 (1-54)||(8926014-8926065)
chr2 (378-408)||(8926393-8926423)
[»] chr4 (1 HSPs)
chr4 (103-200)||(55522713-55522810)
[»] chr3 (1 HSPs)
chr3 (139-200)||(37628696-37628757)
[»] chr5 (1 HSPs)
chr5 (142-200)||(36872707-36872765)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 102 - 321
Target Start/End: Original strand, 8926113 - 8926340
Alignment:
Q  102 ctttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggtg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8926113 ctttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggta 8926212  T
Q  202 ctagttctatacatcatcaaaatttctct--------gtgcatgtttagattaacggtgaacttgacagaatcacgatgtgtcgtgtcacctcgttaagt 293  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8926213 ctagttctatacatcatcaaaatttctctttaatacagtgcatgtttagattaacggtgaacttgacagaatcacgatgtgtcgtgtcacctcgttaagt 8926312  T
Q  294 tcactctgattctaaacatgcatatata 321  Q
    ||||| ||||||||||||||||||||||    
T  8926313 tcactttgattctaaacatgcatatata 8926340  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8926014 - 8926065
Alignment:
Q  1 cactcatcacagcatatactctctcaatcatatatagctgaatattgaagtgag 54  Q
    ||||| |||||||||||||||||  | ||| |||||||||||||||||||||||    
T  8926014 cactcctcacagcatatactctc--attcacatatagctgaatattgaagtgag 8926065  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 8926393 - 8926423
Alignment:
Q  378 aagtgtgtgaaccatagtatatctattgagt 408  Q
    |||||||||||||||||||||||||||||||    
T  8926393 aagtgtgtgaaccatagtatatctattgagt 8926423  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 55522713 - 55522810
Alignment:
Q  103 tttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt 200  Q
    |||||||| |||||||||  ||| |||||||| ||||||| |  | | ||||||||||| || |||||||||||||| || ||||| |||||||||||    
T  55522713 tttccagtagttgacatgaagaatcttaacactgaagagaaagcatcaaccatggagatcataaaagatgcttgtgaaaattggggtttctttgaggt 55522810  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 37628696 - 37628757
Alignment:
Q  139 gagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt 200  Q
    |||||||||||||| |||||||  ||||| ||||||||||| |||||||| |||||||||||    
T  37628696 gagagaaaagctactatggagaaaatcaaggatgcttgtgaaaactggggattctttgaggt 37628757  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 36872765 - 36872707
Alignment:
Q  142 agaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt 200  Q
    ||||||| |||||||||||  || || |||||||||||||| ||||| |||||||||||    
T  36872765 agaaaagataccatggagaaaattaaggatgcttgtgagaattggggattctttgaggt 36872707  T

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