View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21600_high_12 (Length: 405)
Name: NF21600_high_12
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 32183079 - 32183456
Alignment:
| Q |
17 |
tataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32183079 |
tataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgatt |
32183178 |
T |
|
| Q |
117 |
gaacttgacatcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32183179 |
gaacttgacatcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggc |
32183278 |
T |
|
| Q |
217 |
aaatatgaatcaatgatcttgtctttgtgtttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32183279 |
aaatatgaatcaatgatcttgtctttgtgcttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaa |
32183378 |
T |
|
| Q |
317 |
tccgcgaagagtccacttctatgcaaattagtttccactttacactaataccttcgaaaacatcactcacttcttcat |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32183379 |
tccgcgaagagtccacttctatgcaaattagtttccactttacactaataccttcgaaaacatcactcacttcttcat |
32183456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 32158781 - 32159155
Alignment:
| Q |
17 |
tataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgatt |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32158781 |
tataaaactctctagacctcacaaatttgtccaaatcattcttaatatccctttgaagctcttcatcaattgcaagagtgtcgaaactcattggatgatt |
32158880 |
T |
|
| Q |
117 |
gaacttgacatcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggc |
216 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32158881 |
aaacttgacatcaccagaccagct---atattcatttgagtaaatcttgattgccatgtctccttgtttaatctgtttagctatctccatcacataaggc |
32158977 |
T |
|
| Q |
217 |
aaatatgaatcaatgatcttgtctttgtgtttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaa |
316 |
Q |
| |
|
||||||||||| | |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||| || || |
|
|
| T |
32158978 |
aaatatgaatcgaagatcttgttcttgtgcttcttgtgaaaagttagctcataggatcttatttctgacacgggtgaggagtcattatcgtaatgtctaa |
32159077 |
T |
|
| Q |
317 |
tccgcgaagagtccacttctatgcaaattagtttccactttacactaataccttcgaaaacatcactcacttcttcat |
394 |
Q |
| |
|
| | || ||||| |||| ||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
32159078 |
ttcttgatgagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaacatcactcacttcttcat |
32159155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 32111369 - 32111752
Alignment:
| Q |
17 |
tataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgatt |
116 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
32111369 |
tataaaattctttagccctcacaaatttgtccaaatcattcttaatttccctttgaagctcttcatcaattgcaagagtggtgaaactcattggatggtt |
32111468 |
T |
|
| Q |
117 |
gaacttgaca---tcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataa |
213 |
Q |
| |
|
|||||| | | ||||||| ||| | | ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32111469 |
gaacttaataggatcatgacaccaacgattatattcatttgagtgaatcttaagtgtcacaattccttgtttaatttgtttagctatctccatcacataa |
32111568 |
T |
|
| Q |
214 |
ggcaaatatgaatcaatgatcttgtctttgtgtttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttc |
313 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| | ||| || || |
|
|
| T |
32111569 |
ggcaaatatgaatcaatgatcttgtttttgtgtttcttgtgaaaagttagctcatatgatcttatttctgacacaggcgaggagcccctatcaaaatgtc |
32111668 |
T |
|
| Q |
314 |
gaatccgcgaagagtccacttctatgcaaattagtttccactttacactaataccttcgaaaacatcactcacttcttcatctc |
397 |
Q |
| |
|
||| | || ||||| |||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
32111669 |
gaactcttgatgagtcgacttgtatgcatattagtttccactttacactaacaccttcaaaaacatcactcacttcttcatctc |
32111752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 32205784 - 32205512
Alignment:
| Q |
17 |
tataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgatt |
116 |
Q |
| |
|
||||||||||| | ||| ||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32205784 |
tataaaactctttggccttcacaaaattgtccaaatcattcataatttccctttgaagctcttcatcaattgcaagagtgttgaaactcattggatggtt |
32205685 |
T |
|
| Q |
117 |
gaacttgaca---tcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataa |
213 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||| |||||||||||||||||| | ||||||| | ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
32205684 |
gaacttgacaggttcatgactccagcaaccatagtcatttgagtgaatcttgatagccatgtttgcttctttaatttgtttagccatctccatcacataa |
32205585 |
T |
|
| Q |
214 |
ggcaaatatgaatcaatgatcttgtctttgtgtttcttgtgaaaagtcagctcataggatcttatttctgaca |
286 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
32205584 |
ggcaaatatgaatcgatgatcttgttcttgtgtttcttgtgaaaagttagttcataggatctaatttctgaca |
32205512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 32175187 - 32175435
Alignment:
| Q |
143 |
catattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtcttt |
242 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
32175187 |
catattcaattgagtgaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgttttt |
32175286 |
T |
|
| Q |
243 |
gtgtttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaa |
342 |
Q |
| |
|
|||||| ||||||||| | |||||||| ||||||| ||||||| | || ||||||| ||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32175287 |
gtgtttattgtgaaaacttagctcatatgatcttaattctgactcggc---tgagtcattatcataacttcgaatccgcgaagagtccacttgtatgcaa |
32175383 |
T |
|
| Q |
343 |
attagtttccactttacactaataccttcgaaaacatcactcacttcttcat |
394 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
32175384 |
attagtttccactttacactaacacctccaaaaacatcactcacttcttcat |
32175435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 150 - 394
Target Start/End: Original strand, 32119548 - 32119792
Alignment:
| Q |
150 |
atttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtgtttc |
249 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
32119548 |
atttgagcgaatcttgattgccatgtttccttgtttcatttgattagctatctcaatcacataaggcaaatatgaatcgaaaatcttgttcttgtgtttc |
32119647 |
T |
|
| Q |
250 |
ttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaaattagtt |
349 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||| || | |||||||||||||| |
|
|
| T |
32119648 |
ttgtgaaaagttagctcataggatcttatttctgacacggctgaggagtcatcactgtaacttcgaatccgcgacttgtctacctgtatgcaaattagtt |
32119747 |
T |
|
| Q |
350 |
tccactttacactaataccttcgaaaacatcactcacttcttcat |
394 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32119748 |
tccactttacactaataccttcaaaaacatcactcacttcttcat |
32119792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 32211505 - 32211232
Alignment:
| Q |
17 |
tataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgatt |
116 |
Q |
| |
|
||||||||||| | || | ||||| |||||||||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
32211505 |
tataaaactctttggctttgacaaaattgtccaaatcattcataatttcccttcgaagttctatatcaattgcaagagtgttgaaactcattggatggtt |
32211406 |
T |
|
| Q |
117 |
gaacttgaca---tcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataa |
213 |
Q |
| |
|
|||||||||| ||||| | ||||| |||| |||| ||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32211405 |
gaacttgacaggttcatggctccagcatccatgttcagttgagagaatcttgatagccatgtttccttgtttaatttgtttagctatctccatcacataa |
32211306 |
T |
|
| Q |
214 |
ggcaaatatgaatcaatgatcttgtctttgtgtttcttgtgaaaagtcagctcataggatcttatttctgacac |
287 |
Q |
| |
|
|| ||||||||||| | |||| ||| |||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
32211305 |
gggaaatatgaatcgaagatcgtgttcttgtgtttcttgtgaaaagttagttcataggatctaatttctgacac |
32211232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 37 - 393
Target Start/End: Complemental strand, 32211485 - 32211126
Alignment:
| Q |
37 |
acaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgattgaacttgaca---tcatgac |
133 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |
|
|
| T |
32211485 |
acaaaattgtccaaatcattcataatttcccttcgaagttctatatcaattgcaagagtgttgaaactcattggatggttgaacttgacaggttcatggc |
32211386 |
T |
|
| Q |
134 |
gccagctaccatattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgat |
233 |
Q |
| |
|
||||| |||| |||| ||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
32211385 |
tccagcatccatgttcagttgagagaatcttgatagccatgtttccttgtttaatttgtttagctatctccatcacataagggaaatatgaatcgaagat |
32211286 |
T |
|
| Q |
234 |
cttgtctttgtgtttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagt-catcatcgtaacttcgaatccgcgaagagtccac |
332 |
Q |
| |
|
| ||| |||||||||||||||||||| || ||||||||||| ||||||||||| | |||| || ||| ||| | | |||||| || || || | |
|
|
| T |
32211285 |
cgtgttcttgtgtttcttgtgaaaagttagttcataggatctaatttctgacacggatgaggtgtacat-atcattatgtcgaattcgtgatccatcttc |
32211187 |
T |
|
| Q |
333 |
ttctatgcaaattagtttccactttacactaataccttcgaaaacatcactcacttcttca |
393 |
Q |
| |
|
|| |||||| |||| |||||||||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
32211186 |
ttgtatgcatattaatttccactttactgtaataccttcaaaatcatcactcacttcttca |
32211126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 32119391 - 32119496
Alignment:
| Q |
17 |
tataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgatt |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32119391 |
tataaaactctctagcactcacaaatttgtccaaatcattcataatatccctttgaagcccttcatcaattgcaagagtgttgaaactcattggatggtt |
32119490 |
T |
|
| Q |
117 |
gaactt |
122 |
Q |
| |
|
|||||| |
|
|
| T |
32119491 |
gaactt |
32119496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 32175043 - 32175145
Alignment:
| Q |
20 |
aaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgattgaa |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
32175043 |
aaaactctccagccctcacaaatttgtccaaatcgttcataatttccctttgaagatcttcatcaatcgcaagagtgttgaaactcattggatggttgaa |
32175142 |
T |
|
| Q |
120 |
ctt |
122 |
Q |
| |
|
||| |
|
|
| T |
32175143 |
ctt |
32175145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 32157378 - 32157468
Alignment:
| Q |
32 |
ccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaagagtgttgaaactcattggatgattgaactt |
122 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
32157378 |
ccctcacaaatttgtccaaatcattcttaatttccctttgaagctcttcatcaattgcaagagtgttgaaagtcattggatggttgaactt |
32157468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 32178495 - 32178565
Alignment:
| Q |
325 |
gagtccacttctatgcaaattagtttccactttacactaataccttc-gaaaacatcactcacttcttcat |
394 |
Q |
| |
|
||||| |||| ||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
32178495 |
gagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcat |
32178565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 32205462 - 32205405
Alignment:
| Q |
336 |
tatgcaaattagtttccactttacactaataccttcgaaaacatcactcacttcttca |
393 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
32205462 |
tatgcatattaatttccactttactctaataccttcaaaatcatcactcacttcttca |
32205405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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