View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_high_13 (Length: 389)
Name: NF21600_high_13
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 580804 - 581180
Alignment:
| Q |
1 |
tatgagagccaacactttgtaagttatatgtcagatttccatgctgctgcacttcttggtgaattcagtcactcaaaatctatcaaattcgaatcatcaa |
100 |
Q |
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| T |
580804 |
tatgagagccaacactttgtaagttatatgtcagatttccatgctgctgcacttcttggtgaattcagtcactcaaaatctatcaaattcgagtcatcaa |
580903 |
T |
|
| Q |
101 |
aggtaagtatattattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtagcacaagtaggataaatatttat |
200 |
Q |
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| T |
580904 |
aggtaagtatattattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtatcacaagtaggataaatatttat |
581003 |
T |
|
| Q |
201 |
gagtttaatccttttgttataatataaatcagtttcgttgcgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtattt |
300 |
Q |
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| T |
581004 |
gagtttaatccttttgttgtaatataaatcagtttcgttgtgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtattt |
581103 |
T |
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| Q |
301 |
ccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcacaggttct |
377 |
Q |
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| T |
581104 |
ccaatgttgacccatttggaggttggcttcgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttct |
581180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 1214741 - 1214828
Alignment:
| Q |
290 |
tatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcacaggttct |
377 |
Q |
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| T |
1214741 |
tatgtgtatttccaatgttggcccatttggatgttggcttacttagtgttgatattctgttagccttgcttgaaaagacaccggttct |
1214828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 1207516 - 1207609
Alignment:
| Q |
273 |
gatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaag |
366 |
Q |
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| T |
1207516 |
gatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagcattacttcaaaag |
1207609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 1201351 - 1201412
Alignment:
| Q |
289 |
ctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctctt |
350 |
Q |
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| T |
1201351 |
ctatgtgtattttcaacgttgacacatttggaggttggcttgattagtgttgataatctctt |
1201412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 8188851 - 8188771
Alignment:
| Q |
286 |
aagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaag |
366 |
Q |
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| T |
8188851 |
aagctatgtgtatttccaatgttgaccgatttggaggttggtttagttagtgttaatattctgttagccttgcttcaaaag |
8188771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 8188904 - 8188864
Alignment:
| Q |
221 |
aatataaatcagtttcgttgcgtcatccattccaggttctg |
261 |
Q |
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| T |
8188904 |
aatataaatcagtttcgttgtgccattcattccaggttctg |
8188864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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