View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_high_18 (Length: 315)
Name: NF21600_high_18
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 33105215 - 33104935
Alignment:
| Q |
15 |
gaccaaaatagtaatggagtatgcccataccccagatggacttgcagacgccactccgattgacctccctggcgtggtttcattcgacgaacgcgttcct |
114 |
Q |
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| T |
33105215 |
gaccaaaatagtaatggagtatgcccataccccagatggacttgcagacgccactccgattgacctccctggcgtggtttcattcgacgaacgcgttcct |
33105116 |
T |
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| Q |
115 |
ggaggggtggaggacggtgacggacttcctacagtagtagacgaaggtgatggagttgctgctgccggcaaggaacccgcaggagatgctgttggagaat |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33105115 |
ggaggggtggaggacggtgacggacttcctgcagtagtagacgaaggtgatggagttgctgctgccggcaaggaacccgcaggagatgctgttggagaat |
33105016 |
T |
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| Q |
215 |
tggttgacactggggaactagccggagtaggagctggaggtgaagtagtggttggcaccggagaacttgccggagtggaag |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33105015 |
tggttgacactggggaactagccggagtaggagctggaggtgaagtagtggttggcaccggagaacttgccggagtggaag |
33104935 |
T |
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