View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21600_high_23 (Length: 275)

Name: NF21600_high_23
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21600_high_23
NF21600_high_23
[»] chr2 (3 HSPs)
chr2 (101-257)||(38943897-38944053)
chr2 (1-68)||(38944086-38944153)
chr2 (109-153)||(38993391-38993435)
[»] chr6 (2 HSPs)
chr6 (1-67)||(18328589-18328655)
chr6 (101-154)||(18328501-18328554)
[»] chr8 (7 HSPs)
chr8 (101-153)||(21544930-21544982)
chr8 (102-154)||(7499286-7499338)
chr8 (101-142)||(21544229-21544270)
chr8 (101-142)||(21544488-21544529)
chr8 (120-154)||(32721325-32721359)
chr8 (120-153)||(38684867-38684900)
chr8 (121-154)||(43418199-43418232)
[»] scaffold0790 (1 HSPs)
scaffold0790 (120-154)||(3968-4002)
[»] scaffold0188 (1 HSPs)
scaffold0188 (115-153)||(28312-28350)
[»] chr4 (1 HSPs)
chr4 (6-68)||(9453769-9453831)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 38944053 - 38943897
Alignment:
Q  101 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagtttattataaaatatgaaatttccaatttcctctctccatatgctatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38944053 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagtttattataaaatatgaaatttccaatttcctctctccatatgctatt 38943954  T
Q  201 ggtcagcagtcaactcgcactagttcatagtattggtttagcgattcatggagtatg 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38943953 ggtcagcagtcaactcgcactagttcatagtattggtttagcgattcatggagtatg 38943897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38944153 - 38944086
Alignment:
Q  1 tttttaaatagttccgacaagtaattcatgagacacctcaatctcattggaaccgtaatgtagatatc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38944153 tttttaaatagttccgacaagtaattcatgagacacctcaatctcattggaaccgtaatgtagatatc 38944086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 38993435 - 38993391
Alignment:
Q  109 ttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagt 153  Q
    ||||||| ||||||||| |||||||||||||||| ||| ||||||    
T  38993435 ttcaactttaaaagacccgtgcggcgcacgggtcagcgttctagt 38993391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18328655 - 18328589
Alignment:
Q  1 tttttaaatagttccgacaagtaattcatgagacacctcaatctcattggaaccgtaatgtagatat 67  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||    
T  18328655 tttttaaatagttcctacaatttattcatgagacacctcaatctcattggaaccgtaaagtagatat 18328589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 18328554 - 18328501
Alignment:
Q  101 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagtt 154  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  18328554 ttttcatcttcaactctaaaagactcgtgcggcgcacgggtcggcgatctagtt 18328501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 21544982 - 21544930
Alignment:
Q  101 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagt 153  Q
    |||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  21544982 ttttcatcttcaactctataagacccgtgcggcgcacgggtcggtgatctagt 21544930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 7499286 - 7499338
Alignment:
Q  102 tttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagtt 154  Q
    |||||||||||||||||||||| | |||||| ||||||||||||||| |||||    
T  7499286 tttcatcttcaactctaaaagatccgtgcggtgcacgggtcggcgatttagtt 7499338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 21544229 - 21544270
Alignment:
Q  101 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtc 142  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  21544229 ttttcatcttcaactctataagacccgtgcggcgcacgggtc 21544270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 21544488 - 21544529
Alignment:
Q  101 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtc 142  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  21544488 ttttcatcttcaactctataagacccgtgcggcgcacgggtc 21544529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 32721325 - 32721359
Alignment:
Q  120 aagacctgtgcggcgcacgggtcggcgatctagtt 154  Q
    ||||||||||||||||||||||||||| |||||||    
T  32721325 aagacctgtgcggcgcacgggtcggcgttctagtt 32721359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 38684867 - 38684900
Alignment:
Q  120 aagacctgtgcggcgcacgggtcggcgatctagt 153  Q
    |||||| |||||||||||||||||||||||||||    
T  38684867 aagacccgtgcggcgcacgggtcggcgatctagt 38684900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 43418232 - 43418199
Alignment:
Q  121 agacctgtgcggcgcacgggtcggcgatctagtt 154  Q
    |||||||||||||||||||||||||| |||||||    
T  43418232 agacctgtgcggcgcacgggtcggcgttctagtt 43418199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 3968 - 4002
Alignment:
Q  120 aagacctgtgcggcgcacgggtcggcgatctagtt 154  Q
    |||||| ||||||||||||||||||||||||||||    
T  3968 aagacccgtgcggcgcacgggtcggcgatctagtt 4002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 28350 - 28312
Alignment:
Q  115 tctaaaagacctgtgcggcgcacgggtcggcgatctagt 153  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  28350 tctaaaagacccgtgcggcgcacgggtcggcgttctagt 28312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 9453769 - 9453831
Alignment:
Q  6 aaatagttccgacaagtaattcatgagacacctcaatctcattggaaccgtaatgtagatatc 68  Q
    |||||| ||| | ||||||||||| ||||||||||||||||||| || | |||| ||||||||    
T  9453769 aaatagctcctataagtaattcattagacacctcaatctcattgaaaacataatttagatatc 9453831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University