View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21600_high_26 (Length: 241)

Name: NF21600_high_26
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21600_high_26
NF21600_high_26
[»] chr2 (5 HSPs)
chr2 (35-225)||(12013925-12014115)
chr2 (35-85)||(12013867-12013917)
chr2 (71-126)||(11991769-11991824)
chr2 (1-42)||(12013540-12013581)
chr2 (166-225)||(11991997-11992056)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 12013925 - 12014115
Alignment:
Q  35 actagtaataacataaatctttccaaacctccattgaatttctaaaattgagatattaatttacaagataaaagaagtgtaatcaatgtgacacgacagt 134  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12013925 actagtaataacataaatctttccaaaccttcattgaatttctaaaattgagatattaatttacaagaaaaaagaagtgtaatcaatgtgacacgacagt 12014024  T
Q  135 cacaccctgtgtttactcataagagtatacttcataagagttttaacattgtactttgtacttggagaactaatcagtagtaatcatagat 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12014025 cacaccctgtgtttactcataagagtatacttcataagagttttaacattgtactttgtacttggagaactaatcagtagtaatcatagat 12014115  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 12013867 - 12013917
Alignment:
Q  35 actagtaataacataaatctttccaaacctccattgaatttctaaaattga 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12013867 actagtaataacataaatctttccaaacctccattgaatttctaaaattga 12013917  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 11991769 - 11991824
Alignment:
Q  71 aatttctaaaattgagatattaatttacaagataaaagaagtgtaatcaatgtgac 126  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||    
T  11991769 aatttctaaaattgagatattaatttacaagaaaatagaagtgtaatcaatttgac 11991824  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12013540 - 12013581
Alignment:
Q  1 tcagtctttattctattcttctaccccttctataactagtaa 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  12013540 tcagtctttattctattcttctaccccttctataacttgtaa 12013581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 11991997 - 11992056
Alignment:
Q  166 tcataagagttttaacattgtactttgtacttggagaactaatcagtagtaatcatagat 225  Q
    |||||||| |||| ||||||||||| || ||||||||| |||||||||| ||||||||||    
T  11991997 tcataagattttttacattgtacttcgtgcttggagaattaatcagtagcaatcatagat 11992056  T

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