View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_high_27 (Length: 240)
Name: NF21600_high_27
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 38944129 - 38944339
Alignment:
| Q |
1 |
attacttgtcggaactatttaaaaatgattacataggtgagaaaaaataaatcatatatggtatcatgttttgaaaaacctacatagaaatggcaccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38944129 |
attacttgtcggaactatttaaaaatgattacataggtgagaaaaaataaatcatatatggtatcatgttttgaaaaacctacatagaaatggcaccaaa |
38944228 |
T |
|
| Q |
101 |
attttcaaacttagcatactgcatataaactgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38944229 |
attttcaaacttagcatactgcatataaactgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttac |
38944328 |
T |
|
| Q |
201 |
tactccctatg |
211 |
Q |
| |
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||||||||||| |
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| T |
38944329 |
tactccctatg |
38944339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 28127184 - 28127043
Alignment:
| Q |
56 |
atatggtatcatgttttgaaaaacctacatagaaatggcaccaaaattttcaaacttagcatactgcatataaactgtgttcgcattttgattagcgaac |
155 |
Q |
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|||| |||||| |||||||||| || | ||||||| ||||| ||| |||||||||||||| ||| |||| ||| ||| ||| ||||||||| ||| ||| |
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| T |
28127184 |
atattgtatcaatttttgaaaaatctgcctagaaattgcacctaaactttcaaacttagcacactacataaaaattgttttcacattttgataagcaaac |
28127085 |
T |
|
| Q |
156 |
aaatctatccgtgtagaaattcacatccatgaaataactact |
197 |
Q |
| |
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||||||||||||||||| | ||||||||||| |||||||||| |
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| T |
28127084 |
aaatctatccgtgtagatactcacatccatggaataactact |
28127043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 18328636 - 18328841
Alignment:
| Q |
6 |
ttgtcggaactatttaaaaatgattacataggtgagaaaaaataaatcatatatggtatcatgttttgaaaaacctacatagaaatggcaccaaaatttt |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
18328636 |
ttgtaggaactatttaaaaatgattacataggtgagaaaaaataaatcatatatgatatcatgttttgaaaaacctacattgaaatgacaccaaaatttt |
18328735 |
T |
|
| Q |
106 |
caaacttagcatactgcatataaactgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactc |
205 |
Q |
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|||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18328736 |
caaacttagcatacaacatttaaaatgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactc |
18328835 |
T |
|
| Q |
206 |
cctatg |
211 |
Q |
| |
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|||||| |
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|
| T |
18328836 |
cctatg |
18328841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 21545068 - 21545261
Alignment:
| Q |
15 |
ctatttaaaaatgattacataggtgagaaaaaataaatcatatatggtatcatgttttgaaaaacctacatagaaatggcaccaaaattttcaaacttag |
114 |
Q |
| |
|
||||||||||| |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| | |
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| T |
21545068 |
ctatttaaaaacaattacataggctacgaaaaataaattatatatggtatcatgttttgaaaaacctacataaaaatgccaccaaaacttttgaacttgg |
21545167 |
T |
|
| Q |
115 |
catactgcatataaactgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactccct |
208 |
Q |
| |
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|||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
21545168 |
catactaaatataaaccgcgttcgcattttgataagcgaacaaatctatccgtgtagaaattcacatctattgaataactacttactactccct |
21545261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 9453660 - 9453466
Alignment:
| Q |
18 |
tttaaaaatgattacataggtgagaaaaaataaatcatatatggtatcatgttttgaaaaacctacatagaaatggcaccaaaat-tttcaaacttagca |
116 |
Q |
| |
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|||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||| | | |
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| T |
9453660 |
tttaaaaatgattacataagcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacataaaaatggcaccaaaaacttttgaacttggta |
9453561 |
T |
|
| Q |
117 |
tactgcatataaactgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactccctatg |
211 |
Q |
| |
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||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||| |||||||| |||||| |||||||| |
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| T |
9453560 |
tacaacatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatctatggaataactatttactattccctatg |
9453466 |
T |
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