View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21600_high_29 (Length: 213)
Name: NF21600_high_29
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_high_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 41287178 - 41287357
Alignment:
| Q |
18 |
accaatttccttacacgttgagttccattcaatccaagcaaacaagcggacacttaagaacttactccaatgttattctttaatgaatgtggaccaaagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41287178 |
accaatttccttacacgttgagttccattcaatccaaacaaacaagcggacacttaaaaacttactccaatgttattctttaataaatgtggaccaaagc |
41287277 |
T |
|
| Q |
118 |
tcatttgtatctcaataataattttagaatttgtaaaatatacatctaccacactcgatatcataagtcatgcatatttt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41287278 |
tcatttgtatctcaataataattttagaatttgtaaaatatacatctaccacactcgatatcataagtcatgtatatttt |
41287357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 14590593 - 14590627
Alignment:
| Q |
25 |
tccttacacgttgagttccattcaatccaagcaaa |
59 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14590593 |
tccttacacgtcgagttccattcaatccaagcaaa |
14590627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University