View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21600_high_7 (Length: 519)

Name: NF21600_high_7
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21600_high_7
NF21600_high_7
[»] chr2 (26 HSPs)
chr2 (18-503)||(2325498-2325982)
chr2 (24-94)||(17054230-17054300)
chr2 (24-94)||(17071871-17071941)
chr2 (32-94)||(19424770-19424832)
chr2 (18-93)||(26357577-26357652)
chr2 (18-93)||(33551114-33551189)
chr2 (34-95)||(31570878-31570939)
chr2 (32-93)||(41465509-41465570)
chr2 (32-98)||(18494410-18494476)
chr2 (18-94)||(11366509-11366585)
chr2 (32-99)||(13711458-13711525)
chr2 (45-96)||(19093410-19093461)
chr2 (18-91)||(3176941-3177014)
chr2 (32-93)||(19313852-19313913)
chr2 (45-93)||(31861895-31861943)
chr2 (32-91)||(33660510-33660569)
chr2 (32-91)||(36641988-36642047)
chr2 (32-95)||(41960881-41960944)
chr2 (32-91)||(44285951-44286010)
chr2 (32-94)||(4264219-4264281)
chr2 (48-94)||(39788580-39788626)
chr2 (38-95)||(4166920-4166977)
chr2 (24-93)||(37905709-37905777)
chr2 (45-93)||(22963400-22963448)
chr2 (45-93)||(22998029-22998077)
chr2 (18-54)||(43648373-43648409)
[»] chr8 (27 HSPs)
chr8 (18-97)||(1204922-1205001)
chr8 (18-95)||(43643711-43643788)
chr8 (18-84)||(37970635-37970701)
chr8 (32-93)||(13307622-13307683)
chr8 (18-94)||(1150221-1150297)
chr8 (27-91)||(7891073-7891137)
chr8 (32-96)||(34894963-34895027)
chr8 (18-93)||(10555318-10555393)
chr8 (32-93)||(15009241-15009302)
chr8 (18-94)||(16446991-16447067)
chr8 (18-94)||(27082954-27083030)
chr8 (18-94)||(30654699-30654775)
chr8 (18-94)||(8803926-8803998)
chr8 (18-81)||(23854547-23854610)
chr8 (32-95)||(24823402-24823465)
chr8 (38-93)||(33906223-33906278)
chr8 (32-95)||(38643975-38644038)
chr8 (25-95)||(36695089-36695159)
chr8 (32-93)||(5300076-5300137)
chr8 (34-95)||(16222860-16222921)
chr8 (40-93)||(41362517-41362570)
chr8 (32-91)||(465843-465902)
chr8 (32-79)||(11727037-11727084)
chr8 (37-92)||(35459833-35459888)
chr8 (40-93)||(4133146-4133199)
chr8 (48-92)||(3858849-3858893)
chr8 (56-96)||(39099263-39099303)
[»] chr7 (30 HSPs)
chr7 (32-91)||(25691670-25691729)
chr7 (25-95)||(26524445-26524515)
chr7 (18-92)||(48928674-48928748)
chr7 (32-93)||(5657606-5657667)
chr7 (18-97)||(24211712-24211791)
chr7 (32-93)||(8861260-8861321)
chr7 (32-92)||(33688387-33688446)
chr7 (18-93)||(27283719-27283794)
chr7 (32-93)||(15612883-15612944)
chr7 (18-95)||(17842697-17842774)
chr7 (18-95)||(32821164-32821241)
chr7 (18-94)||(31579180-31579256)
chr7 (18-97)||(12390741-12390820)
chr7 (40-95)||(18797302-18797357)
chr7 (18-93)||(37109847-37109922)
chr7 (25-79)||(22687228-22687282)
chr7 (18-99)||(30055495-30055577)
chr7 (45-95)||(40381938-40381988)
chr7 (32-93)||(6546494-6546555)
chr7 (32-93)||(34362273-34362334)
chr7 (19-95)||(9355938-9356014)
chr7 (27-91)||(23111167-23111231)
chr7 (18-93)||(31520834-31520909)
chr7 (18-93)||(37346997-37347072)
chr7 (18-77)||(48928407-48928466)
chr7 (32-94)||(21991610-21991672)
chr7 (38-91)||(8299192-8299245)
chr7 (25-94)||(43686015-43686084)
chr7 (25-93)||(4582894-4582962)
chr7 (45-93)||(23402371-23402419)
[»] chr1 (41 HSPs)
chr1 (25-98)||(1547278-1547351)
chr1 (38-97)||(11742475-11742534)
chr1 (18-97)||(37619001-37619080)
chr1 (18-96)||(32267027-32267105)
chr1 (18-92)||(14758038-14758112)
chr1 (18-95)||(15382927-15383004)
chr1 (18-95)||(16415639-16415716)
chr1 (18-94)||(30254419-30254495)
chr1 (32-96)||(39393376-39393440)
chr1 (18-93)||(31621658-31621733)
chr1 (32-94)||(2959743-2959805)
chr1 (18-92)||(10922724-10922798)
chr1 (32-93)||(3309144-3309205)
chr1 (34-91)||(15752027-15752084)
chr1 (32-93)||(38823210-38823271)
chr1 (32-97)||(48620629-48620694)
chr1 (32-96)||(22170747-22170811)
chr1 (27-94)||(18422646-18422713)
chr1 (24-94)||(19899880-19899950)
chr1 (24-94)||(30254853-30254923)
chr1 (32-93)||(7079193-7079254)
chr1 (18-95)||(8222125-8222202)
chr1 (32-77)||(27533099-27533144)
chr1 (18-91)||(27763415-27763487)
chr1 (18-83)||(28564886-28564951)
chr1 (40-93)||(47682620-47682673)
chr1 (32-96)||(34012496-34012560)
chr1 (45-93)||(43579242-43579290)
chr1 (38-93)||(21289661-21289716)
chr1 (34-93)||(23999343-23999402)
chr1 (18-93)||(30327057-30327132)
chr1 (18-96)||(15168082-15168160)
chr1 (18-91)||(46931406-46931482)
chr1 (45-94)||(13876919-13876968)
chr1 (40-93)||(27227604-27227657)
chr1 (18-91)||(28769651-28769724)
chr1 (18-91)||(33725705-33725778)
chr1 (18-91)||(41926161-41926234)
chr1 (32-96)||(3534925-3534989)
chr1 (34-94)||(10182129-10182189)
chr1 (18-54)||(32216090-32216126)
[»] chr5 (35 HSPs)
chr5 (18-98)||(22974182-22974262)
chr5 (32-93)||(15724490-15724551)
chr5 (32-96)||(8742001-8742065)
chr5 (18-93)||(14409426-14409501)
chr5 (32-95)||(27330304-27330367)
chr5 (38-92)||(22980794-22980848)
chr5 (38-91)||(699152-699205)
chr5 (18-95)||(13956445-13956522)
chr5 (32-97)||(19119855-19119920)
chr5 (18-95)||(35826583-35826660)
chr5 (34-100)||(5112429-5112495)
chr5 (32-94)||(9200232-9200294)
chr5 (32-93)||(7693230-7693291)
chr5 (25-93)||(16004483-16004552)
chr5 (18-96)||(24886099-24886179)
chr5 (27-95)||(12910348-12910416)
chr5 (32-95)||(8466743-8466806)
chr5 (39-90)||(13380498-13380549)
chr5 (32-91)||(25501040-25501099)
chr5 (27-93)||(26317793-26317859)
chr5 (45-94)||(36055874-36055923)
chr5 (18-95)||(38528336-38528413)
chr5 (37-94)||(39572818-39572875)
chr5 (24-92)||(31705717-31705785)
chr5 (18-96)||(14919628-14919707)
chr5 (38-93)||(22019632-22019687)
chr5 (45-96)||(22616491-22616542)
chr5 (18-81)||(27318587-27318650)
chr5 (18-80)||(26268087-26268149)
chr5 (19-93)||(31786747-31786821)
chr5 (38-100)||(35933895-35933957)
chr5 (27-93)||(36866762-36866828)
chr5 (38-95)||(36860421-36860478)
chr5 (18-94)||(1429245-1429321)
chr5 (32-92)||(32563150-32563210)
[»] chr4 (36 HSPs)
chr4 (18-96)||(35021171-35021249)
chr4 (32-97)||(29584348-29584413)
chr4 (18-95)||(32912716-32912793)
chr4 (32-92)||(4597994-4598054)
chr4 (18-94)||(25184112-25184188)
chr4 (32-96)||(32579441-32579505)
chr4 (32-95)||(17272009-17272072)
chr4 (32-91)||(34948247-34948306)
chr4 (24-95)||(55478037-55478108)
chr4 (18-95)||(34361627-34361704)
chr4 (32-97)||(38011850-38011915)
chr4 (35-91)||(52516599-52516655)
chr4 (32-95)||(7152256-7152319)
chr4 (18-96)||(25701193-25701271)
chr4 (32-93)||(7703517-7703578)
chr4 (32-93)||(28003136-28003197)
chr4 (18-94)||(879684-879760)
chr4 (25-97)||(4205112-4205184)
chr4 (34-98)||(39397913-39397977)
chr4 (32-91)||(47253751-47253810)
chr4 (38-93)||(55241260-55241315)
chr4 (45-95)||(2704510-2704560)
chr4 (24-93)||(19440790-19440860)
chr4 (45-95)||(38812260-38812310)
chr4 (18-95)||(4396324-4396401)
chr4 (38-91)||(27396618-27396671)
chr4 (39-91)||(20097485-20097537)
chr4 (27-90)||(6864038-6864101)
chr4 (32-94)||(37287732-37287795)
chr4 (25-91)||(17167715-17167781)
chr4 (25-91)||(17173292-17173358)
chr4 (45-87)||(52195645-52195687)
chr4 (18-79)||(5048101-5048162)
chr4 (45-93)||(38811813-38811861)
chr4 (18-94)||(42199728-42199804)
chr4 (32-68)||(54499389-54499425)
[»] chr6 (15 HSPs)
chr6 (32-97)||(4318946-4319011)
chr6 (18-93)||(7235143-7235218)
chr6 (32-94)||(8513232-8513294)
chr6 (32-91)||(30353481-30353540)
chr6 (18-92)||(20768087-20768161)
chr6 (34-94)||(7055340-7055400)
chr6 (18-95)||(1945831-1945909)
chr6 (34-95)||(5627389-5627450)
chr6 (38-91)||(6088910-6088963)
chr6 (32-77)||(15491631-15491676)
chr6 (38-94)||(3880068-3880124)
chr6 (45-101)||(19631741-19631797)
chr6 (32-91)||(29182165-29182224)
chr6 (19-97)||(18498429-18498507)
chr6 (45-101)||(11084152-11084208)
[»] chr3 (32 HSPs)
chr3 (18-94)||(40552369-40552445)
chr3 (25-96)||(35844314-35844385)
chr3 (18-97)||(47481509-47481588)
chr3 (32-93)||(45174494-45174555)
chr3 (18-91)||(46297872-46297945)
chr3 (32-94)||(7327606-7327669)
chr3 (19-93)||(51213092-51213166)
chr3 (55-97)||(53175710-53175752)
chr3 (32-93)||(4015451-4015512)
chr3 (18-95)||(22450957-22451034)
chr3 (18-95)||(48354930-48355007)
chr3 (32-92)||(25579731-25579791)
chr3 (18-94)||(52041033-52041109)
chr3 (41-95)||(21193595-21193649)
chr3 (25-83)||(29099356-29099414)
chr3 (45-95)||(40640634-40640684)
chr3 (33-94)||(11466814-11466875)
chr3 (24-93)||(20373412-20373481)
chr3 (27-96)||(55343403-55343472)
chr3 (18-94)||(3655312-3655388)
chr3 (36-92)||(29163839-29163895)
chr3 (45-97)||(32180747-32180799)
chr3 (18-93)||(37157699-37157774)
chr3 (18-93)||(54505799-54505874)
chr3 (32-78)||(11357489-11357535)
chr3 (18-95)||(21009912-21009992)
chr3 (32-94)||(26941384-26941446)
chr3 (45-91)||(53818509-53818555)
chr3 (39-92)||(11835737-11835790)
chr3 (32-93)||(44891498-44891558)
chr3 (46-90)||(4556543-4556587)
chr3 (32-80)||(40935995-40936043)
[»] scaffold0009 (2 HSPs)
scaffold0009 (32-94)||(42347-42409)
scaffold0009 (32-99)||(100815-100882)
[»] scaffold0291 (1 HSPs)
scaffold0291 (18-96)||(7884-7962)
[»] scaffold0262 (1 HSPs)
scaffold0262 (44-93)||(12137-12186)
[»] scaffold0002 (1 HSPs)
scaffold0002 (41-94)||(133-186)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 2325498 - 2325982
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttttatattaatcgttttgatctt 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |    
T  2325498 actcaatacatttatgatgttatattgttaacttcacgagaaaagtcattcacataacttcaccatagaattttccttttatattaatcgttttgatcct 2325597  T
Q  118 taaatttgcttcgattacaccaattaatttggataattttccattaatttgtttgtttgtaagagagggagagacatcttatatttatctcaccttgtac 217  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2325598 taaattcgctttgattacaccaattaatttggataattttccattaatttgtttgtttgtaagagagggagagacatcttatatttatctcaccttgtac 2325697  T
Q  218 agannnnnnnnngcattacactttaattaatggatcgaggtaatttaaccatataatttttctttcttcatgtttttcatctttactcttgcaatcaatt 317  Q
    |||         ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  2325698 agatttttttttgcattacactttaattaatggatcgaggtaatttaaccatataatttttttttcttcatgtttttcatctttagtcttgcaatcaatt 2325797  T
Q  318 atagttcagctttgttccatttaacagatggtaatacatgtctcaccacctttcgcgcacacactatatatccatccatagttattatt-aatcatatcc 416  Q
    ||||| || ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||||||||    
T  2325798 atagtgcaactttgttccatttaagagggggtaatacatgtctcaccacctttcgcgcacacac--tatatccatccatacttattattaaatcatatcc 2325895  T
Q  417 cctagttctcatcatccatcctttggtttatacacacactatcacgtaaaaagagtaaatcatttgaataaaacttttacgtgatgg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2325896 cctagttctcatcatccatcctttggtttatacacacactatcacgtaaaaagagtaaatcatttgaataaaacttttacgtgatgg 2325982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 17054230 - 17054300
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||| |||||||||||| |||||||||| | ||||||||||||||| ||||||||||| |||||||||    
T  17054230 tacatttttgatgttatagtattaacttcaccaaaaaagtcattcgcatgacttcaccatagaattttcct 17054300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 17071871 - 17071941
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||| || |||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||    
T  17071871 tacatttttgttgttatagtgttaacttcaccaaaaaagtcattcgcatgacttcaccatagaattttcct 17071941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 19424770 - 19424832
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||    
T  19424770 tgatgttatagtgttaacttcaccagaaaagccattctcatgacttcaccataaaattttcct 19424832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 26357652 - 26357577
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| |||| || ||||||||||||||||||||||  ||||||||||||  ||| ||||||||||||||||||||    
T  26357652 actcactacagttttgatgttatagtgttaacttcatcagaaaagtcattttcatgacttcaccataaaattttcc 26357577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 33551114 - 33551189
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||| |||||||| || ||||||||    
T  33551114 actcactacatttttgatgttatagtgttaacttcactaaaaaagtcattctcatgacttcaccgtagaattttcc 33551189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 31570878 - 31570939
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||||||||||| ||||| |||||||| |||| ||||||||||||||| ||||||||||    
T  31570878 atgttatagtgttaatttcaccagaaaagttattctcataacttcaccatagaattttcctt 31570939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 41465570 - 41465509
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||    
T  41465570 tgatgctatagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 41465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 18494410 - 18494476
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttta 98  Q
    ||||| ||||||||||||||||| ||||||||||||  ||| ||||||||| | |||||||||||||    
T  18494410 tgatgctatagtgttaacttcaccagaaaagtcattttcatgacttcaccacagaattttcctttta 18494476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 11366509 - 11366585
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| ||||||||||||||||| ||||| | |||||||||||  || | ||||||||| |||||||||    
T  11366509 actcattacatttttgatgttatagtgttaatttcaccaaaaaagtcattcttatgatttcaccatagaattttcct 11366585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 13711525 - 13711458
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttttat 99  Q
    ||||| |||| |||||||||||| |||||||||||||  || ||||||||||| ||||||| ||||||    
T  13711525 tgatgctataatgttaacttcaccagaaaagtcattctgatgacttcaccatagaattttcattttat 13711458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 19093461 - 19093410
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    |||||||||| |||||| |||||| ||| |||||||||||||||||||||||    
T  19093461 ttaacttcaccagaaaaatcattctcatgacttcaccataaaattttccttt 19093410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 3177014 - 3176941
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||||| |||||| |||| ||||||| |||||||||  ||||||||||||  | ||||||||||||| ||||||    
T  3177014 actcaaaacatttttgatattatagtattaacttcatcagaaaagtcattttcgtaacttcaccatagaatttt 3176941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 19313913 - 19313852
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| |||| |||||||||||| |||||||||||||  || ||||||||||| ||||||||    
T  19313913 tgatgctataatgttaacttcaccagaaaagtcattctaatgacttcaccatagaattttcc 19313852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 31861943 - 31861895
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||||||||| | ||||||||||| ||||||||||||||| ||||||||    
T  31861943 ttaacttcaccaaaaaagtcattctcataacttcaccatagaattttcc 31861895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 33660510 - 33660569
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||||||||||||||||||| || ||||||||||||   || ||||||||||| ||||||    
T  33660510 tgatgttatagtgttaacttaactagaaaagtcattttaatgacttcaccatagaatttt 33660569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 36642047 - 36641988
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| |||||| |||| ||||| ||||||||||||| ||| ||||||||||| ||||||    
T  36642047 tgatgctatagtattaatttcaccagaaaagtcattctcatgacttcaccatagaatttt 36641988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 41960944 - 41960881
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||||||||||||||||||  | ||||||||||   || ||||||||||| ||||||||||    
T  41960944 tgatgttatagtgttaacttcatcaaaaaagtcatttctatgacttcaccatagaattttcctt 41960881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 44286010 - 44285951
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| ||||||||||||||||  |||||| |||||||||| |||||||| || ||||||    
T  44286010 tgatgctatagtgttaacttcatcagaaaaatcattcgcatgacttcaccgtataatttt 44285951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 4264219 - 4264281
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| |||||||||||||| || ||||||||||||   || ||||||||||| |||||||||    
T  4264219 tgatgctatagtgttaactttaccagaaaagtcattatgatgacttcaccatagaattttcct 4264281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 39788580 - 39788626
Alignment:
Q  48 acttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||| |||||||||||||  || |||||||||||||||||||||    
T  39788580 acttcactagaaaagtcattcttatgacttcaccataaaattttcct 39788626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 4166977 - 4166920
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||| |||||||||||| ||||||||||||  | | ||||||||||| ||||||||||    
T  4166977 tataatgttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcctt 4166920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 37905777 - 37905709
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||| | ||||||||||||||||||||| | |||| |||||   |||||||||||||| ||||||||    
T  37905777 tacattttttatgttatagtgttaacttcacca-aaaaatcatttttataacttcaccatagaattttcc 37905709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 22963448 - 22963400
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||| || |||||||||||||  || ||||||||||||||||||||    
T  22963448 ttaactttaccagaaaagtcattcttatgacttcaccataaaattttcc 22963400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 22998029 - 22998077
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||| || |||||||||||||  || ||||||||||||||||||||    
T  22998029 ttaactttaccagaaaagtcattcttatgacttcaccataaaattttcc 22998077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 43648373 - 43648409
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcac 54  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  43648373 actcattacatttttgatgttatagtgttaacttcac 43648409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 1205001 - 1204922
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||| ||||||| | ||||||||||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||    
T  1205001 actcactacattttttatgttatagtgttaacttcaccagaaaagtcattctcatgacttcaccgtaaaattttcctttt 1204922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 43643711 - 43643788
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| ||||||||||||||||||||||| | || |||||||| ||| ||||||||||| ||||||||||    
T  43643711 actcattacatttttgatgttatagtgttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcctt 43643788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 37970635 - 37970701
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccata 84  Q
    ||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||| |||||||||||    
T  37970635 actcattacatttttgatgttatagtgttaacttcaccaaaaaagtcattctcatgacttcaccata 37970701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 13307683 - 13307622
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| |||||| |||||| ||| ||||||||||| ||||||||    
T  13307683 tgatgttatagtgttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 13307622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 1150221 - 1150297
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| ||||||||||| ||||||||||| | |||||||||||  || ||||||||||| |||||||||    
T  1150221 actcattacatttttgatgttatagcgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcct 1150297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 7891073 - 7891137
Alignment:
Q  27 atttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||| ||||||||||||||||||||||| | ||||||||||| ||| ||||||||||| ||||||    
T  7891073 atttttgatgttatagtgttaacttcacaaaaaaagtcattctcatgacttcaccatagaatttt 7891137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 34895027 - 34894963
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||||||||||||||||||||  ||||||||||||  ||| ||||||||||| |||||||||||    
T  34895027 tgatgttatagtgttaacttcatcagaaaagtcattttcatgacttcaccatagaattttccttt 34894963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 10555318 - 10555393
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||| | ||||||||||||||||||||| | ||||||||||| ||| |||||||| || ||||||||    
T  10555318 actcattacattttttatgttatagtgttaacttcaccaaaaaagtcattctcatgacttcaccgtagaattttcc 10555393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 15009302 - 15009241
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| | |||||||||||  || ||||||||||| ||||||||    
T  15009302 tgatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcc 15009241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 16446991 - 16447067
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| |||| || |||||||||||||||||||| |  ||||||||||||  ||| ||||||||||| |||||||||    
T  16446991 actcactacaattttgatgttatagtgttaactttatcagaaaagtcattttcatgacttcaccatagaattttcct 16447067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27082954 - 27083030
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| |||| || ||||| ||||||||||||||||| |||||||||| ||  || ||||||||||| |||||||||    
T  27082954 actcactacacttttgatgctatagtgttaacttcaccagaaaagtcagtctgatgacttcaccatagaattttcct 27083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 30654699 - 30654775
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| | ||||||||||||||||||||| | |||| ||| ||  || |||||||||||||||||||||    
T  30654699 actcattacattttttatgttatagtgttaacttcaccaaaaaaatcactcttatgacttcaccataaaattttcct 30654775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 8803926 - 8803998
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| ||||||||||||||||||||||| | |||||||||    || ||||||||||| |||||||||    
T  8803926 actcattacatttttgatgttatagtgttaacttcaccaaaaaagtcat----atgacttcaccatagaattttcct 8803998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 23854547 - 23854610
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcacc 81  Q
    ||||| ||||||| | ||||||||||||||||||||| | ||||||||||| ||| ||||||||    
T  23854547 actcattacattttttatgttatagtgttaacttcaccaaaaaagtcattctcatgacttcacc 23854610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 24823402 - 24823465
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||| |||||||||||||||||| | ||||||||||| |||||||| ||||||  |||||||||    
T  24823402 tgatattatagtgttaacttcaccaaaaaagtcattctcataactttaccatagtattttcctt 24823465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 33906278 - 33906223
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||| ||||||| ||||||||||||| ||||| ||||||||| ||||||||    
T  33906278 tatagtgttgacttcaccagaaaagtcattctcataatttcaccatagaattttcc 33906223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 38644038 - 38643975
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||||||||||||||||| || | ||||||||||| ||| | ||||||||| ||||||||||    
T  38644038 tgatgttatagtgttaacttgaccaaaaaagtcattctcatgatttcaccatagaattttcctt 38643975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 36695089 - 36695159
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||| |||| |||||||||||||||||  ||||||||||||  | | ||||||||||| ||||||||||    
T  36695089 acatttttgatattatagtgttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcctt 36695159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 5300076 - 5300137
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||||||||||||  | ||||||||||| ||| ||||||||||| ||||||||    
T  5300076 tgatgctatagtgttaacttcattaaaaaagtcattctcatgacttcaccatagaattttcc 5300137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 16222921 - 16222860
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||||||||||| ||||| ||||||||||||| ||| | |||||| || ||||||||||    
T  16222921 atgttatagtgttaaattcaccagaaaagtcattctcatgatttcaccgtagaattttcctt 16222860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 41362570 - 41362517
Alignment:
Q  40 tagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||| | ||||||||||  ||||||||||||||| ||||||||    
T  41362570 tagtgttaacttcaccaaaaaagtcattttcataacttcaccatagaattttcc 41362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 465902 - 465843
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||||||| ||||||||||||| | ||||||||||   || ||||||||||||||||||    
T  465902 tgatgttatcgtgttaacttcaccacaaaagtcattttaatgacttcaccataaaatttt 465843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 11727084 - 11727037
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttca 79  Q
    ||||||||||||||||||||||| | |||| |||||| ||||||||||    
T  11727084 tgatgttatagtgttaacttcaccaaaaaaatcattctcataacttca 11727037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 35459833 - 35459888
Alignment:
Q  37 ttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||||| ||||||| |||| ||||||||||| ||| ||||||||||| |||||||    
T  35459833 ttatagtattaactttacgaaaaaagtcattctcatgacttcaccatagaattttc 35459888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 4133146 - 4133199
Alignment:
Q  40 tagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||| | |||||||||||  || |||| |||||||||||||||    
T  4133146 tagtgttaacttcaccaaaaaagtcattctgatgacttgaccataaaattttcc 4133199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 3858893 - 3858849
Alignment:
Q  48 acttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||||| |||||||||||||| || | |||||||||||||||||    
T  3858893 acttcactagaaaagtcattcgtattatttcaccataaaattttc 3858849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 39099263 - 39099303
Alignment:
Q  56 agaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||||||||||| ||| ||||||||||| |||||||||||    
T  39099263 agaaaagtcattctcatgacttcaccatagaattttccttt 39099303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 25691670 - 25691729
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  25691670 tgatgttatagtgttaacttcacgagaaaagtcattctcatgacttcaccataaaatttt 25691729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 26524445 - 26524515
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||| |||||||||||||||||| |||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  26524445 acatttttgatgttatagtgttaacatcaccagaaaagtcattctcatgacttcaccatagaattttcctt 26524515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 48928674 - 48928748
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||| |||| || ||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||    
T  48928674 actcactacacttttgatgttatagtgttgacttcaccagaaaagtcattctcatgacttcaccataaaattttc 48928748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 5657606 - 5657667
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||    
T  5657606 tgatgttatagtgttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 5657667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 24211791 - 24211712
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||| ||||||| ||||||||||||||||||||||| | |||||||||||  || ||||||||||| ||||||| ||||    
T  24211791 actcattacatttttgatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcttttt 24211712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 8861321 - 8861260
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||    
T  8861321 tgatgctatagtgttaacttcgcgagaaaagtcattctcatgacttcaccatagaattttcc 8861260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 33688387 - 33688446
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    |||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||    
T  33688387 tgatgttatagtgttaactt-accagaaaagtcattctcataacttcaccatataattttc 33688446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 27283794 - 27283719
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||| ||||||||||||||||||||||| | |||| |||||   |||||||||||||| ||||||||    
T  27283794 actcattacatttttgatgttatagtgttaacttcaccaaaaaaatcatttttataacttcaccatagaattttcc 27283719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 15612883 - 15612944
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| ||||| || |||| ||| ||||||||||| ||||||||    
T  15612883 tgatgttatagtgttaacttcacaagaaacgttattctcatgacttcaccatagaattttcc 15612944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 17842697 - 17842774
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| | ||||||||||||||||||||| | ||||||||||   || ||||||||||| ||||||||||    
T  17842697 actcattacattttttatgttatagtgttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcctt 17842774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 32821164 - 32821241
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| |||||||||| |||||||||||| | |||| |||||  ||| ||||||||||| ||||||||||    
T  32821164 actcactacatttttgatgttatattgttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttcctt 32821241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 31579180 - 31579256
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| ||||||||||||||||||||||| | |||| | ||||  || ||||||||||| |||||||||    
T  31579180 actcattacatttttgatgttatagtgttaacttcaccaaaaaaattattcttatgacttcaccatagaattttcct 31579256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 12390741 - 12390820
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||| |||| || ||||||||||||||||||||||| | |||||||  ||  || ||||||||||| ||||||||||||    
T  12390741 actcattacacttttgatgttatagtgttaacttcaccaaaaaagtcgatctgatgacttcaccatagaattttcctttt 12390820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 18797357 - 18797302
Alignment:
Q  40 tagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||||||||||| | ||||||||||| ||| ||||||||||| ||||||||||    
T  18797357 tagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctt 18797302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 37109922 - 37109847
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||| | ||||||||||||||||||||| | ||||||||||   || ||||||||||| ||||||||    
T  37109922 actcattacattttttatgttatagtgttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcc 37109847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 22687282 - 22687228
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttca 79  Q
    |||||| ||||||||||||||||||||||  ||||||||||||| ||| ||||||    
T  22687282 acatttttgatgttatagtgttaacttcatcagaaaagtcattctcatgacttca 22687228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 30055577 - 30055495
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttca-cgagaaaagtcattcgcataacttcaccataaaattttccttttat 99  Q
    ||||| |||| || |||| ||||||||||||||||| | | |||||||||||  || ||||||||||| ||||||||||||||    
T  30055577 actcattacaattttgatattatagtgttaacttcatcaaaaaaagtcattcttatgacttcaccatagaattttccttttat 30055495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 40381988 - 40381938
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||||||| ||||||||||||| |||||||||||| || ||||||||||    
T  40381988 ttaacttcaccagaaaagtcattctcataacttcaccgtagaattttcctt 40381938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 6546555 - 6546494
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||||||||||||| |||||| ||||||  || ||||||||||| ||||||||    
T  6546555 tgatgctatagtgttaacttcactagaaaaatcattcttatgacttcaccatagaattttcc 6546494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 34362273 - 34362334
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||||||||||  | ||||||||||||| ||||| ||||||||| ||||||||    
T  34362273 tgatgctatagtgttaactttcctagaaaagtcattctcataatttcaccatagaattttcc 34362334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 9355938 - 9356014
Alignment:
Q  19 ctcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||| ||||||| | ||| ||||||||||| ||||| | ||  ||||||| ||| ||||||||||||||||||||||    
T  9355938 ctcactacattttttatgctatagtgttaaattcaccaaaatggtcattctcatgacttcaccataaaattttcctt 9356014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 23111231 - 23111167
Alignment:
Q  27 atttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||| ||||||||||||||||||||||| |||||| |||||  ||| ||||||||| | ||||||    
T  23111231 atttttgatgttatagtgttaacttcaccagaaaaatcattttcatgacttcaccacagaatttt 23111167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 31520834 - 31520909
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| || |||| ||||| |||||| |||||||||| | ||||||||||  ||| |||||| |||||||||||||    
T  31520834 actcactatatttttgatggtatagtattaacttcaccaaaaaagtcattttcatgacttcatcataaaattttcc 31520909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 37347072 - 37346997
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| || |||| ||||| |||||| |||||||||| | |||| |||||  ||| ||||||||||||||||||||    
T  37347072 actcattatatttttgatggtatagtattaacttcaccaaaaaaatcattttcatgacttcaccataaaattttcc 37346997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 48928407 - 48928466
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataactt 77  Q
    ||||| |||| || ||||||||||||||| ||||||| ||||||||||||| ||| ||||    
T  48928407 actcactacacttttgatgttatagtgttgacttcaccagaaaagtcattctcatgactt 48928466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 21991672 - 21991610
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||||||||||||| | |||| |||||| ||| |||||||| || |||||||||    
T  21991672 tgatgctatagtgttaacttcaccataaaaatcattctcatgacttcaccctagaattttcct 21991610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 8299245 - 8299192
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||||||||||||||| ||||||||||||  | | ||||||||||| ||||||    
T  8299245 tatagtgttaacttcaccagaaaagtcattttcgtgacttcaccatagaatttt 8299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 43686084 - 43686015
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||||| |||| ||||||||||||||||||   ||||||||||  | | ||||||||||| |||||||||    
T  43686084 acatttttgatattatagtgttaacttcacccaaaaagtcattttcgtgacttcaccatagaattttcct 43686015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 4582962 - 4582894
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||||| ||||  |||||| |||||||||| ||||||||||||  | | ||||||||||| ||||||||    
T  4582962 acatttttgatactatagtattaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcc 4582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 23402371 - 23402419
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||||||||| ||||||||||||| ||| ||||| ||||| ||||||||    
T  23402371 ttaacttcaccagaaaagtcattctcatgacttcgccatagaattttcc 23402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 1547351 - 1547278
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttta 98  Q
    |||||| | ||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||    
T  1547351 acattttttatgttatagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctttta 1547278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 11742475 - 11742534
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  11742475 tatagtgttaacttcaccagaaaagtcattctcataacttcacgataaaattttcctttt 11742534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 37619001 - 37619080
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||| || |||| ||||||||||||||||||||||| | |||||||||||  |||||||||||||| ||||||||||||    
T  37619001 actcattaaatttttgatgttatagtgttaacttcaccaaaaaagtcattcttataacttcaccatagaattttcctttt 37619080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 32267105 - 32267027
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| ||||||| |||||||||| |||||||||||| | |||||||||||  || |||||||||||||||||||||||    
T  32267105 actcattacatttttgatgttatattgttaacttcacaaaaaaagtcattcttatgacttcaccataaaattttccttt 32267027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 14758112 - 14758038
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||| |||| || ||||||||||||||| ||||||| ||||||||||||| ||| |||||||| ||||||||||    
T  14758112 actcactacacttttgatgttatagtgttgacttcaccagaaaagtcattctcatgacttcaccgtaaaattttc 14758038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 15383004 - 15382927
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| ||||||||||||||||| ||||| | ||||||||||   |||||||||||||| ||||||||||    
T  15383004 actcattacatttttgatgttatagtgttaatttcaccaaaaaagtcatttttataacttcaccatagaattttcctt 15382927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 16415716 - 16415639
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| |||| || ||||| ||||||||||||||||| ||||||||||||| ||| |||||||| || ||||||||||    
T  16415716 actcactacacttttgatgctatagtgttaacttcaccagaaaagtcattctcatgacttcaccttagaattttcctt 16415639  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 30254495 - 30254419
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| |||||||||| |||||||||||  | |||||||||||  |||||||||||||| |||||||||    
T  30254495 actcattacatttttgatgttatattgttaacttcaacaaaaaagtcattcttataacttcaccatagaattttcct 30254419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 39393440 - 39393376
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| ||||||||||||||||  ||||||||||||| |||||||||||| || |||||||||||    
T  39393440 tgatgctatagtgttaacttcattagaaaagtcattctcataacttcaccgtagaattttccttt 39393376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 31621658 - 31621733
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||  | ||||||||||||||| ||||||| ||||||||||||| ||| |||||||| || ||||||||    
T  31621658 actcaatacacctttgatgttatagtgttgacttcactagaaaagtcattctcatgacttcaccgtagaattttcc 31621733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 2959805 - 2959743
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||||||||||||||||||  ||||||||||||  ||| ||||||||||| |||||||||    
T  2959805 tgatgttatagtgttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcct 2959743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 10922798 - 10922724
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||| ||||||| | ||||||||||||||||||||| | |||| |||||| ||| | |||||||||||||||||    
T  10922798 actcattacattttttatgttatagtgttaacttcaccaaaaaaatcattctcatgatttcaccataaaattttc 10922724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 3309205 - 3309144
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||||||||||||||||||| || ||||||||||||| ||| |||| |||||| ||||||||    
T  3309205 tgatgttatagtgttaactttaccagaaaagtcattctcatgactttaccatagaattttcc 3309144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 15752084 - 15752027
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||||||||||||||||||| | ||||||||||| ||| ||||||||||| ||||||    
T  15752084 atgttatagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaatttt 15752027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 38823271 - 38823210
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| |||||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||    
T  38823271 tgatgctatagtgttaacttaaccagaaaagtcattctcatgacttcaccatagaattttcc 38823210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 48620694 - 48620629
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    |||||||||| |||||||||||| ||||||||||||   ||||||||| |||| ||||||||||||    
T  48620694 tgatgttatattgttaacttcacaagaaaagtcattttaataacttcaacatagaattttcctttt 48620629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 22170811 - 22170747
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||||||||||||||||||||  ||||||||||||  ||| | ||||||||| |||||||||||    
T  22170811 tgatgttatagtgttaacttcattagaaaagtcattttcatgatttcaccatagaattttccttt 22170747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 18422713 - 18422646
Alignment:
Q  27 atttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||| ||||||||||||||||||||||| | ||||||||||   || ||||||||||| |||||||||    
T  18422713 atttttgatgttatagtgttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcct 18422646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 19899880 - 19899950
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||| ||||||||||||||||||||||| | |||| |||||   || ||||||||||| |||||||||    
T  19899880 tacatttttgatgttatagtgttaacttcaccaaaaaaatcattattatgacttcaccatagaattttcct 19899950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 30254923 - 30254853
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||| ||||||||||||||||||||||  | ||||||||||   || ||||||||||| |||||||||    
T  30254923 tacatttttgatgttatagtgttaacttcatcaaaaaagtcattattatgacttcaccatagaattttcct 30254853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 7079193 - 7079254
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||| |||||||||||||||||| | ||||||||||  ||| |||| |||||||||||||||    
T  7079193 tgatattatagtgttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 7079254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 8222202 - 8222125
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| ||||||||||||||||||||||| | ||| ||||||   || |||||||| || ||||||||||    
T  8222202 actcattacatttttgatgttatagtgttaacttcactaaaaaggtcatttttatgacttcaccgtagaattttcctt 8222125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 27533099 - 27533144
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataactt 77  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  27533099 tgatgctatagtgttaacttcaccagaaaagtcattctcataactt 27533144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 27763415 - 27763487
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| ||||||| ||||||||||||||||||||||| | |||| ||||||  ||||||| |||||||| ||||    
T  27763415 actcattacatttttgatgttatagtgttaacttcac-aaaaaaatcattcttataactttaccataaattttt 27763487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 28564886 - 28564951
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccat 83  Q
    ||||| ||||||| ||||||||||||||||||||||  | |||| |||||  ||||||||||||||    
T  28564886 actcattacatttttgatgttatagtgttaacttcatcaaaaaaatcattttcataacttcaccat 28564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 47682620 - 47682673
Alignment:
Q  40 tagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||| | |||||||| || ||| ||||||||||||||||||||    
T  47682620 tagtgttaacttcaccaaaaaagtcactctcatgacttcaccataaaattttcc 47682673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 34012496 - 34012560
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||||||||||||||||||||  | ||| ||||||  ||| ||||||||||| |||||||||||    
T  34012496 tgatgttatagtgttaacttcatcataaacgtcattttcatgacttcaccatagaattttccttt 34012560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 43579290 - 43579242
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||||    
T  43579290 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 43579242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 21289716 - 21289661
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||| ||| | ||||||    
T  21289716 tatagtgttaacttcaccagaaaagtcattctcatgacttcacaatagatttttcc 21289661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 23999402 - 23999343
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||||||||||| | |||| ||||||  || ||||||||||||||||||||    
T  23999402 atgttgtagtgttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttcc 23999343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 30327057 - 30327132
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||| ||||||||||||||||| ||||| | ||||||||||   || ||||||| ||| ||||||||    
T  30327057 actcattacatttttgatgttatagtgttaaattcacaaaaaaagtcatttttatgacttcactatagaattttcc 30327132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 15168160 - 15168082
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| |||| || ||||| ||||||||| ||||||| ||||||  ||||| ||| ||||||| ||| |||||||||||    
T  15168160 actcactacacttttgatgctatagtgttgacttcaccagaaaaagcattctcatcacttcacgatagaattttccttt 15168082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 46931482 - 46931406
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcac---gagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| ||||||| |||||||||||||||||||||||    | |||| ||||||  |||||||||||||| ||||||    
T  46931482 actcattacatttttgatgttatagtgttaacttcacaaaaaaaaaattcattcttataacttcaccatagaatttt 46931406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 13876919 - 13876968
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||||||||| | ||||||||||  ||||||||||||||| |||||||||    
T  13876919 ttaacttcaccataaaagtcattttcataacttcaccatagaattttcct 13876968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 27227604 - 27227657
Alignment:
Q  40 tagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||| | |||| |||||| ||| ||||||||||| ||||||||    
T  27227604 tagtgttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcc 27227657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 28769724 - 28769651
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| ||||||| |||||| |||||||||||||||| | |||||| |||   || ||||||||||| ||||||    
T  28769724 actcattacatttttgatgtcatagtgttaacttcacaaaaaaagttatttttatgacttcaccatagaatttt 28769651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 33725705 - 33725778
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||||||||| || ||||| ||||| ||| ||||||| ||||||||||||| | | |||| |||||| ||||||    
T  33725705 actcaatacacttttgatgatatagcgttgacttcactagaaaagtcattctcttgactttaccatagaatttt 33725778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 41926234 - 41926161
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| || |||| |||||||||||| |||||||||  | |||| |||||  ||||||||||||||| ||||||    
T  41926234 actcactatatttttgatgttatagtattaacttcatcaaaaaaatcattttcataacttcaccatagaatttt 41926161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 3534989 - 3534925
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||||||||||||||||||||| |||||| | ||||  || ||||||  ||| |||||||||||    
T  3534989 tgatgttatagtgttaacttcactagaaaattaattctaatgacttcataatagaattttccttt 3534925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 10182129 - 10182189
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||||| ||| |||||||||| | ||||||||||  ||| ||||||||||| |||||||||    
T  10182129 atgttacagttttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 10182189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 32216126 - 32216090
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcac 54  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  32216126 actcactacatttttgatgttatagtgttaacttcac 32216090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 22974182 - 22974262
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttta 98  Q
    ||||| ||| ||| ||||||||||||||||||||||| | |||| |||||| ||||||||||||||| |||||||||||||    
T  22974182 actcattacttttttgatgttatagtgttaacttcaccaaaaaaatcattctcataacttcaccatagaattttcctttta 22974262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 15724551 - 15724490
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||    
T  15724551 tgatgttatagtgttaacttcaccaaaaaagtcattctcataacttcaccatagaattttcc 15724490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 8742001 - 8742065
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||    
T  8742001 tgatgctatagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttccttt 8742065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 14409426 - 14409501
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||| ||||||||||||||| ||||||| |||||| |||||| ||| ||||||||||| ||||||||    
T  14409426 actcactacatttttgatgttatagtgttgacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 14409501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 27330367 - 27330304
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||||||||||||||||||| ||||||||||||| ||  ||||||||||| ||||||||||    
T  27330367 tgatgttatagtgttaacttcaccagaaaagtcattcccacgacttcaccatagaattttcctt 27330304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 22980848 - 22980794
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  22980848 tatagtgttaacttcaccagaaaagtcattctcataacttcatcataaaattttc 22980794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 699205 - 699152
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  699205 tatagtgttaacttcatcagaaaagtcattctcataacttcaccataaaatttt 699152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 13956445 - 13956522
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| |||| || |||||||||||||||||||||| |||||||||||||  ||| |||||||| || ||||||||||    
T  13956445 actcactacagttttgatgttatagtgttaacttcatgagaaaagtcattttcatgacttcaccgtagaattttcctt 13956522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 19119920 - 19119855
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||| ||||||||||||||||| | ||||||||||| ||| ||||||||||| ||||||||||||    
T  19119920 tgatgctatagtgttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcctttt 19119855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 35826583 - 35826660
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| |||||||||||| |||||||||| | ||||||||||  ||| ||||||||||| ||||||||||    
T  35826583 actcagtacatttttgatgttatagtattaacttcacaaaaaaagtcattatcatgacttcaccatagaattttcctt 35826660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 5112429 - 5112495
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttttata 100  Q
    |||||||||| |||||||||| | ||||||||||  ||| |||||||||||||||||||||| ||||    
T  5112429 atgttatagtattaacttcaccaaaaaagtcattttcatgacttcaccataaaattttccttgtata 5112495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 9200294 - 9200232
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||||||||||||||||||| |||||||| |||   || |||||||||||||||||||||    
T  9200294 tgatgttatagtgttaacttcaccagaaaagttattttaatgacttcaccataaaattttcct 9200232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 7693291 - 7693230
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| ||||||||||||   || ||||||||||| ||||||||    
T  7693291 tgatgttatagtgttaacttcaccagaaaagtcattttaatgacttcaccatagaattttcc 7693230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 16004483 - 16004552
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtc-attcgcataacttcaccataaaattttcc 93  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||| ||| |||| |||||| ||||||||    
T  16004483 acatttttgatgttatagtgttaacttcaccagaaaagtcaattctcatgactttaccatagaattttcc 16004552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 24886179 - 24886099
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaa--gtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| ||||||| |||||||||||| |||||||||| | ||||  ||||||| ||| | |||||||||||||||||||||    
T  24886179 actcattacatttttgatgttatagtattaacttcaccaaaaaaaagtcattctcatgatttcaccataaaattttccttt 24886099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 12910416 - 12910348
Alignment:
Q  27 atttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||| |||||||||||| |||||||||| | ||||||||||  ||| ||||||||||| ||||||||||    
T  12910416 atttttgatgttatagttttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcctt 12910348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 8466806 - 8466743
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||||| |||||||||||||| ||||||||||||| ||| || ||| |||| ||||||||||    
T  8466806 tgatgttacagtgttaacttcaccagaaaagtcattctcatgacctcatcatagaattttcctt 8466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 13380549 - 13380498
Alignment:
Q  39 atagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattt 90  Q
    |||| ||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  13380549 atagggttaacttcactagaaaagtcattctcatgacttcaccataaaattt 13380498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 25501040 - 25501099
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| |||||||||||||| || ||||||||||||| ||| ||||||||||| ||||||    
T  25501040 tgatgctatagtgttaactttaccagaaaagtcattctcatgacttcaccatagaatttt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 26317793 - 26317859
Alignment:
Q  27 atttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||| ||||||||||||||||||||||| | ||||||||||  ||| |||||| |||| ||||||||    
T  26317793 atttttgatgttatagtgttaacttcaccaaaaaagtcattttcatgacttcatcatagaattttcc 26317859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 36055874 - 36055923
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||||||||| ||||||||||||| ||| || ||||||||||||||||||    
T  36055874 ttaacttcacaagaaaagtcattctcatgacatcaccataaaattttcct 36055923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 38528336 - 38528413
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| |||| || ||||||||||||||||||||||  ||||||  ||||  ||| ||||||||||| ||||||||||    
T  38528336 actcattacaattttgatgttatagtgttaacttcatcagaaaaaccattttcatgacttcaccatagaattttcctt 38528413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 39572875 - 39572818
Alignment:
Q  37 ttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||| ||||||| || ||||||||||||| ||| ||||||||||| |||||||||    
T  39572875 ttatagtattaacttaactagaaaagtcattctcatgacttcaccatagaattttcct 39572818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 31705717 - 31705785
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||||| ||||||||||||||||||||||| | |||| |||||   || ||||||||||| |||||||    
T  31705717 tacatttttgatgttatagtgttaacttcaccaaaaaaatcatttttatgacttcaccatagaattttc 31705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 14919628 - 14919707
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttca-cgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| ||||||| |||||||||| ||||||||||| | | |||| | |||| ||| ||||||||||| |||||||||||    
T  14919628 actcattacatttttgatgttataatgttaacttcatcaaaaaaaataattctcatgacttcaccatataattttccttt 14919707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 22019687 - 22019632
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||||| |||||||||| |||||||||||||  |||||||||||||| || |||||    
T  22019687 tatagttttaacttcaccagaaaagtcattctaataacttcaccatagaaatttcc 22019632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 22616542 - 22616491
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    |||||||||| ||||||||||||  ||| ||||||||||| |||||||||||    
T  22616542 ttaacttcaccagaaaagtcattttcatgacttcaccatagaattttccttt 22616491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 27318587 - 27318650
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcacc 81  Q
    ||||| ||||||| | ||||| ||||||||||||||| |||||| |||||| ||| ||||||||    
T  27318587 actcactacattttttatgttttagtgttaacttcaccagaaaaatcattctcatgacttcacc 27318650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 26268149 - 26268087
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcac 80  Q
    |||||| ||| || ||||| ||||||||||||||||| |||||| |||||| ||| |||||||    
T  26268149 actcaaaacacttttgatgctatagtgttaacttcaccagaaaaatcattctcatgacttcac 26268087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31786747 - 31786821
Alignment:
Q  19 ctcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||| ||||||| | ||| ||||||||||||||||| | ||||||||||| ||  ||||||| ||| ||||||||    
T  31786747 ctcactacatttttcatgctatagtgttaacttcaccaaaaaagtcattctcactacttcactatagaattttcc 31786821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 35933957 - 35933895
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttttata 100  Q
    ||||||||||||||||  | |||| |||||| ||| ||||||||||| ||||||||| |||||    
T  35933957 tatagtgttaacttcatcaaaaaaatcattctcatgacttcaccatacaattttcctattata 35933895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 36866828 - 36866762
Alignment:
Q  27 atttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||| |||| |||||||||||||||||| |||||| |||||  | | ||||||||||| ||||||||    
T  36866828 atttttgatattatagtgttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcc 36866762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 36860478 - 36860421
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||||||||||||| |||||| |||||  | | ||||||||||| ||||||||||    
T  36860478 tatagtgttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcctt 36860421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 1429245 - 1429321
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| || |||| ||||| ||||||||||||||||| | || |||||||  ||| ||||||||||| | |||||||    
T  1429245 actcactatatttttgatgctatagtgttaacttcaccaaaagagtcattttcatgacttcaccatagatttttcct 1429321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 32563210 - 32563150
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||||||||||||||||||||  |||||| |||||   || ||||||||||| |||||||    
T  32563210 tgatgttatagtgttaacttcatcagaaaaatcattttaatgacttcaccatagaattttc 32563150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 35021171 - 35021249
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| ||||||| |||||||||| |||||||||||| ||||||||||||  ||| ||||||||||| |||||||||||    
T  35021171 actcactacatttttgatgttataatgttaacttcaccagaaaagtcattttcatgacttcaccatagaattttccttt 35021249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 29584348 - 29584413
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||||||||||||||||||||| ||||||||||||| ||  ||||||||||| ||||||||||||    
T  29584348 tgatgttatagtgttaacttcaccagaaaagtcattcccacgacttcaccatagaattttcctttt 29584413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 32912716 - 32912793
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| ||||||||||||||||||||||| | |||||||||||  || ||||||||||| ||||||||||    
T  32912716 actcattacatttttgatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcctt 32912793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 4598054 - 4597994
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||    
T  4598054 tgatgttatagtgttaacttcaccagaaaagtcattctaatgacttcaccataaaattttc 4597994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 25184188 - 25184112
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| ||||||||||||||||||||||| | || |||||||| ||| ||||||||||| |||||||||    
T  25184188 actcattacatttttgatgttatagtgttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcct 25184112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 32579505 - 32579441
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    |||||||||| |||| ||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  32579505 tgatgttataatgttgacttcaccagaaaagtcattctcagaacttcaccataaaattttccttt 32579441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 17272072 - 17272009
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||||||||||||||||||| ||||||||||||| ||  ||||||||||| ||||||||||    
T  17272072 tgatgttatagtgttaacttcaccagaaaagtcattcccacgacttcaccatagaattttcctt 17272009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 34948247 - 34948306
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||||    
T  34948247 tgatgttatagtgttaacttcgccagaaaagtcattctcatgacttcaccataaaatttt 34948306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 55478037 - 55478108
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||| ||||||||||||||||||||||| | |||| |||||| ||| ||||||||||| ||||||||||    
T  55478037 tacatttttgatgttatagtgttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcctt 55478108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 34361627 - 34361704
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| | ||||||||||||||||||||| | |||||||||||  || ||||||||||| ||||||||||    
T  34361627 actcattacattttttatgttatagtgttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcctt 34361704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 38011915 - 38011850
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||||||||||||| ||||||| ||||||||||||| ||| | ||||||||| ||||||||||||    
T  38011915 tgatgttatagtgttgacttcaccagaaaagtcattctcatgatttcaccatagaattttcctttt 38011850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 52516655 - 52516599
Alignment:
Q  35 tgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||    
T  52516655 tgttatagtgttaacttcaccataaaagtcattctcatgacttcaccataaaatttt 52516599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 7152256 - 7152319
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||||||| ||||||||| || |||||||||||| |||| ||||||||||| ||||||||||    
T  7152256 tgatgttataatgttaactttaccagaaaagtcattagcatgacttcaccatagaattttcctt 7152319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 25701193 - 25701271
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| |||| || |||||||||| ||||||||| || | ||||||||||  ||| |||||||||||||||||||||||    
T  25701193 actcactacacttttgatgttataatgttaactttaccaaaaaagtcattatcatgacttcaccataaaattttccttt 25701271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 7703578 - 7703517
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||| | |||| ||||||||    
T  7703578 tgatgttatagtgttaacttcaccagaaaagtcattctcatgactttaacatagaattttcc 7703517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 28003136 - 28003197
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||||| ||||||| ||||||||||||| ||| ||||||||||| ||||||||    
T  28003136 tgatgctatagtgttgacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 28003197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 879684 - 879760
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| ||||||||||||||| ||||||| | |||| | |||| ||| |||||||| ||||||||||||    
T  879684 actcattacatttttgatgttatagtgtttacttcaccaaaaaaattattctcatgacttcaccttaaaattttcct 879760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 4205184 - 4205112
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    |||||| |||| |||||||||||||||||  ||||||||||||  | | ||||||||||| ||||||||||||    
T  4205184 acatttttgatattatagtgttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcctttt 4205112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 39397977 - 39397913
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttta 98  Q
    ||||||||||||||||||||| | |||||||||||  || ||||||||||| |||||||| ||||    
T  39397977 atgttatagtgttaacttcaccataaaagtcattctaatgacttcaccatagaattttccattta 39397913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 47253810 - 47253751
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| ||||||||||||||||| | ||||||||||| ||| ||||||||||| ||||||    
T  47253810 tgatgatatagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaatttt 47253751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 55241260 - 55241315
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||||| |||||||||| ||||||||||||| ||| ||||||||||| ||||||||    
T  55241260 tatagtattaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 55241315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 2704560 - 2704510
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||||||| ||||||||||||  ||| ||||||||||||||||||||||    
T  2704560 ttaacttcaccagaaaagtcattttcatgacttcaccataaaattttcctt 2704510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 19440790 - 19440860
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataac-ttcaccataaaattttcc 93  Q
    ||||||| |||||||||||||||||| |||| | ||||||||||| ||| || ||||||||| ||||||||    
T  19440790 tacatttttgatgttatagtgttaacatcaccaaaaaagtcattctcatgactttcaccatagaattttcc 19440860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 38812260 - 38812310
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  38812260 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 38812310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 4396401 - 4396324
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| | ||||||||||||||||||||| | ||||||||||   || ||||||| ||| ||||||||||    
T  4396401 actcattacattttttatgttatagtgttaacttcactaaaaaagtcatttttatgacttcactatagaattttcctt 4396324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 27396671 - 27396618
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||| |||||||||||| ||||||||||||| ||| ||||||||||| ||||||    
T  27396671 tataatgttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 27396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 20097485 - 20097537
Alignment:
Q  39 atagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||| ||||||    
T  20097485 atagggttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 6864101 - 6864038
Alignment:
Q  27 atttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattt 90  Q
    |||| ||||||||||||| ||||||||| | ||||||||||| ||| || |||||||| |||||    
T  6864101 atttttgatgttatagtgataacttcaccaaaaaagtcattctcatgacatcaccatacaattt 6864038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 37287795 - 37287732
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaa-gtcattcgcataacttcaccataaaattttcct 94  Q
    |||||||||||||||||||| || | |||| ||||||| ||| ||||||||||| |||||||||    
T  37287795 tgatgttatagtgttaactttaccaaaaaaagtcattctcattacttcaccatagaattttcct 37287732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 17167781 - 17167715
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||||| |||| ||||| |||||||||||  ||||||||||||  | ||||||||||||| ||||||    
T  17167781 acatttttgatattataatgttaacttcatcagaaaagtcattttcgtaacttcaccatagaatttt 17167715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 17173358 - 17173292
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||||| |||| ||||| |||||||||||  ||||||||||||  | ||||||||||||| ||||||    
T  17173358 acatttttgatattataatgttaacttcatcagaaaagtcattttcgtaacttcaccatagaatttt 17173292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 52195645 - 52195687
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaa 87  Q
    |||||||||  ||||||||||||| ||||||||||||||||||    
T  52195645 ttaacttcatcagaaaagtcattctcataacttcaccataaaa 52195687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 5048101 - 5048162
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttca 79  Q
    ||||| |||| || ||||||||||| ||| ||||||| |||||| |||||| ||||||||||    
T  5048101 actcactacacttttgatgttatagagttgacttcaccagaaaaatcattctcataacttca 5048162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 38811861 - 38811813
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||||||||| |||||| |||||| ||| ||||||||||| ||||||||    
T  38811861 ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 38811813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 42199804 - 42199728
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| |||||||||||| |||||||||| | |||| ||||||  || | ||||||||| | |||||||    
T  42199804 actcattacatttttgatgttatagtattaacttcaccaaaaaaatcattcttatgatttcaccatagatttttcct 42199728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 54499389 - 54499425
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattc 68  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  54499389 tgatgctatagtgttaacttcaccagaaaagtcattc 54499425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 4318946 - 4319011
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||||||||||||||||||||| | ||||||||||| ||| ||||||||||| ||||||||||||    
T  4318946 tgatgttatagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctttt 4319011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 7235143 - 7235218
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| |||| || ||||||||||||||| |||||||  |||||||||||| ||||||||||||||| ||||||||    
T  7235143 actcactacacttttgatgttatagtgttgacttcaccggaaaagtcattctcataacttcaccatagaattttcc 7235218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 8513294 - 8513232
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||    
T  8513294 tgatattatagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 30353481 - 30353540
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||||||||| |||||||||||| ||||||||||||| ||| ||||||||||| ||||||    
T  30353481 tgatgttataatgttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 30353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 20768161 - 20768087
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||| |||| || ||||| ||||||||| ||||||| ||||||||||||| ||| ||||||||||| |||||||    
T  20768161 actcactacacttttgatgctatagtgttgacttcaccagaaaagtcattctcatgacttcaccatagaattttc 20768087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 7055340 - 7055400
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||||||||||||||||| | |||| ||||||  || |||||||||||||||||||||    
T  7055340 atgttatagtgttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttcct 7055400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 1945909 - 1945831
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttca-cgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| |||||||||||||||||||||| | | |||||||||||  || |||||||| || ||||||||||    
T  1945909 actcattacatttttgatgttatagtgttaacttcaccaaaaaaagtcattcttatgacttcaccgtagaattttcctt 1945831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 5627450 - 5627389
Alignment:
Q  34 atgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||||||||||||||||||| | |||||||||||  || |||||||| || ||||||||||    
T  5627450 atgttatagtgttaacttcaccaaaaaagtcattcttatgacttcaccttagaattttcctt 5627389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 6088963 - 6088910
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||||||||||||||| |||||| |||||| ||| ||||||||||| ||||||    
T  6088963 tatagtgttaacttcaccagaaaaatcattctcatgacttcaccatagaatttt 6088910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 15491676 - 15491631
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataactt 77  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||    
T  15491676 tgatgttacaatgttaacttcacgagaaaagtcattctcataactt 15491631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 3880068 - 3880124
Alignment:
Q  38 tatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||| |||||||||||| ||||||||||||| | | ||||||||||| |||||||||    
T  3880068 tataatgttaacttcaccagaaaagtcattctcgtgacttcaccatagaattttcct 3880124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 19631797 - 19631741
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttttatat 101  Q
    |||||||||| |||||||||||||  || ||||||||||| |||||||||| |||||    
T  19631797 ttaacttcaccagaaaagtcattcttatgacttcaccatagaattttccttgtatat 19631741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 29182224 - 29182165
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||||||||||||||||||||  |  ||| |||||| ||| ||||||||||||||||||    
T  29182224 tgatgttatagtgttaacttcatcaataaaatcattctcatgacttcaccataaaatttt 29182165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 18498507 - 18498429
Alignment:
Q  19 ctcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    |||| |||| || ||||| |||| |||||||||||| || |||||||||| ||| ||||||| ||| | ||||||||||    
T  18498507 ctcactacacttttgatgctataatgttaacttcaccaggaaagtcattctcatgacttcactatagatttttcctttt 18498429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 11084152 - 11084208
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttttatat 101  Q
    ||||||| || |||||||| |||  ||| ||||||||||| ||||||||||||||||    
T  11084152 ttaactttaccagaaaagttattttcatgacttcaccatagaattttccttttatat 11084208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 40552369 - 40552445
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| ||||||||||||||||||||| | | ||||||||||| ||| ||||||||||| |||||||||    
T  40552369 actcattacatttttgatgttatagtgttaacttctccaaaaaagtcattctcatgacttcaccatagaattttcct 40552445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 35844385 - 35844314
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    |||||| || |||||||||||||||||||| ||||||||||||  ||| ||||||||||| |||||||||||    
T  35844385 acatttttgttgttatagtgttaacttcaccagaaaagtcattatcatgacttcaccatagaattttccttt 35844314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 47481588 - 47481509
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    ||||| ||||||| ||||||||||||||||||||||| | |||  ||||||  || ||||||||||||||||||||||||    
T  47481588 actcattacatttttgatgttatagtgttaacttcaccaaaaacatcattcctatgacttcaccataaaattttcctttt 47481509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 45174555 - 45174494
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| | |||||| |||| || |||||||||||||||||||||    
T  45174555 tgatgttatagtgttaacttcaccaaaaaagttattctcacaacttcaccataaaattttcc 45174494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 46297872 - 46297945
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    ||||| || |||| ||||||||||||||||||||||| ||||||||||||  ||| ||||||||||| ||||||    
T  46297872 actcactatatttttgatgttatagtgttaacttcaccagaaaagtcattttcatgacttcaccatagaatttt 46297945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 7327606 - 7327669
Alignment:
Q  32 tgatgttatagtgtt-aacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||||||||||| |||||||| | ||||||||||| ||||||||||||||| |||||||||    
T  7327606 tgatgttatagtgtttaacttcactaaaaaagtcattctcataacttcaccatagaattttcct 7327669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 51213092 - 51213166
Alignment:
Q  19 ctcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    |||| ||||||| | |||||| |||||||||||||| | ||||||||||| ||| ||||||||||| ||||||||    
T  51213092 ctcattacattttttatgttacagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 51213166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 53175752 - 53175710
Alignment:
Q  55 gagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  53175752 gagaaaagtcattctcataacttcaccataaaattttcctttt 53175710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 4015512 - 4015451
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||||||||||||  ||||||||||||| ||| ||||||||||| ||||||||    
T  4015512 tgatgctatagtgttaacttcatcagaaaagtcattctcatgacttcaccatagaattttcc 4015451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 22451034 - 22450957
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| |||| || ||||| ||||||||| ||||||| |||||| |||||| ||| ||||||||||| ||||||||||    
T  22451034 actcactacacttttgatgctatagtgttgacttcaccagaaaaatcattctcatgacttcaccatagaattttcctt 22450957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 48355007 - 48354930
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| | || |||||||||||||||||| | |||| |||||| ||| ||||||||||| ||||||||||    
T  48355007 actcattacatttttaatattatagtgttaacttcaccataaaaatcattctcatgacttcaccatagaattttcctt 48354930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 25579791 - 25579731
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||| |||||| |||||||||| |||||| |||||| |||||||| ||||||||||||||    
T  25579791 tgatgctatagtattaacttcaccagaaaaatcattctcataacttaaccataaaattttc 25579731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 52041033 - 52041109
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| |||| || |||||||||||| |||||||||| ||||||||||||| ||| ||||||||  | |||||||||    
T  52041033 actcactacacttttgatgttatagtattaacttcaccagaaaagtcattctcatgacttcacctcagaattttcct 52041109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 21193649 - 21193595
Alignment:
Q  41 agtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||||||||||| ||||||||||||| ||| |||| |||||| ||||||||||    
T  21193649 agtgttaacttcaccagaaaagtcattctcatgactttaccatagaattttcctt 21193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 29099414 - 29099356
Alignment:
Q  25 acatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccat 83  Q
    |||||| | ||||||||||||||||||||| |||||||||||||  || ||||||||||    
T  29099414 acattttttatgttatagtgttaacttcaccagaaaagtcattctaatgacttcaccat 29099356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 40640634 - 40640684
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    |||||||||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  40640634 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 40640684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 11466875 - 11466814
Alignment:
Q  33 gatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||||||| |||||||||  ||||||||||||| ||  ||||||||||| |||||||||    
T  11466875 gatgttatagtcttaacttcatcagaaaagtcattctcaagacttcaccatagaattttcct 11466814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 20373412 - 20373481
Alignment:
Q  24 tacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||| |||||||||||| |||||||||| | |||| ||||||  || ||||||| ||||||||||||    
T  20373412 tacatttttgatgttatagtattaacttcaccaaaaaaatcattcttatgacttcactataaaattttcc 20373481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 55343403 - 55343472
Alignment:
Q  27 atttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    |||| |||| |||||||||||||||||  ||||||||||||  | | ||||||||||| |||||||||||    
T  55343403 atttttgatattatagtgttaacttcatcagaaaagtcattttcgtgacttcaccatagaattttccttt 55343472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 3655312 - 3655388
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||| ||||||| | |||||||||||||||||| |  | ||||||||||   || |||||||||||||||||||||    
T  3655312 actcattacattttttatgttatagtgttaactttatcaaaaaagtcatttttatgacttcaccataaaattttcct 3655388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 29163895 - 29163839
Alignment:
Q  36 gttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    ||||||||||||||||||| |||||| |||||   || |||||||||||||||||||    
T  29163895 gttatagtgttaacttcaccagaaaaatcattttaatgacttcaccataaaattttc 29163839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 32180747 - 32180799
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcctttt 97  Q
    |||||||||| ||||||||||||| |||||||||||| || ||||||| ||||    
T  32180747 ttaacttcactagaaaagtcattctcataacttcaccgtacaattttcatttt 32180799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 37157774 - 37157699
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| |||| || ||||||||||||||||||||||  | ||||| ||||  ||| ||||||||||| ||||||||    
T  37157774 actcactacaattttgatgttatagtgttaacttcatcaaaaaagccattttcatgacttcaccatagaattttcc 37157699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 54505874 - 54505799
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||| ||||||| ||||||||||||||||||||||  | |||||||||||     |||||| |||||||||||||    
T  54505874 actcattacatttttgatgttatagtgttaacttcaacaaaaaagtcattcttgcgacttcatcataaaattttcc 54505799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 11357489 - 11357535
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttc 78  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| |||||    
T  11357489 tgatgctatagtgttaacttcaccagaaaagtcattctcatgacttc 11357535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 21009912 - 21009992
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcac---gagaaaagtcattcgcataacttcaccataaaattttcctt 95  Q
    ||||| ||||||| |||||||||||||| || |||||    | |||| ||||||  |||||||||||||||||||||||||    
T  21009912 actcattacatttttgatgttatagtgtcaaattcacaaaaaaaaaaatcattcttataacttcaccataaaattttcctt 21009992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 26941384 - 26941446
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||| |||||||||||||||||| | |||| ||||||  || ||||||||||| |||||||||    
T  26941384 tgattttatagtgttaacttcaccaaaaaaatcattcttatgacttcaccatagaattttcct 26941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 53818509 - 53818555
Alignment:
Q  45 ttaacttcacgagaaaagtcattcgcataacttcaccataaaatttt 91  Q
    |||||||||| |||||| |||||| ||| ||||||||||||||||||    
T  53818509 ttaacttcaccagaaaaatcattctcatgacttcaccataaaatttt 53818555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 11835737 - 11835790
Alignment:
Q  39 atagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttc 92  Q
    |||||||||||||||| | |||| |||||| ||| ||||||||||| |||||||    
T  11835737 atagtgttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttc 11835790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 44891558 - 44891498
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||||||||||||||| | ||||||||||  ||| |||||||| || ||||||||    
T  44891558 tgatgttatagtgttaacttcacca-aaaagtcattttcatgacttcaccgtataattttcc 44891498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 4556587 - 4556543
Alignment:
Q  46 taacttcacgagaaaagtcattcgcataacttcaccataaaattt 90  Q
    ||||||||||||||||||||||  ||| ||||||||||| |||||    
T  4556587 taacttcacgagaaaagtcattttcatgacttcaccatagaattt 4556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 40936043 - 40935995
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcac 80  Q
    ||||| ||||||||||||||||| |||||| |||||| ||| |||||||    
T  40936043 tgatgctatagtgttaacttcaccagaaaaatcattctcatgacttcac 40935995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 42409 - 42347
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    ||||||||||||||||||||||| |||||| | |||| ||| |||||||||||||||||||||    
T  42409 tgatgttatagtgttaacttcaccagaaaaattattctcatgacttcaccataaaattttcct 42347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 100882 - 100815
Alignment:
Q  32 tgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttttat 99  Q
    ||||||||||| ||||||||||| | |||| |||||| ||| ||||||||||| ||||||||||||||    
T  100882 tgatgttatagcgttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttccttttat 100815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 7962 - 7884
Alignment:
Q  18 actcaatacatttatgatgttatagtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttccttt 96  Q
    ||||| |||| || ||||||||||||||||||||||  | |||||||||||  |||||||||||||| |||||| ||||    
T  7962 actcattacaattttgatgttatagtgttaacttcatcaaaaaagtcattcttataacttcaccatagaatttttcttt 7884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 12137 - 12186
Alignment:
Q  44 gttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcc 93  Q
    ||||||||||| ||||||||||||| |||||||||| |||| ||||||||    
T  12137 gttaacttcaccagaaaagtcattctcataacttcatcatagaattttcc 12186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 186 - 133
Alignment:
Q  41 agtgttaacttcacgagaaaagtcattcgcataacttcaccataaaattttcct 94  Q
    |||||||||||||| ||||||||||||  | | ||||||||||| |||||||||    
T  186 agtgttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcct 133  T

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