View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21600_high_8 (Length: 475)
Name: NF21600_high_8
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 34792959 - 34793415
Alignment:
| Q |
1 |
cgaggtgacaatcacggtcttagatatttgaatataatttatcaatggannnnnnnnccatgaggagaaagggatagatagaaaaaccattaagagtgct |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34792959 |
cgaggtgacaatcacggtcctagatatttgaatataatttatcaatggattttttttccatgaggagaaagggatagatagaaaaaccattaagagtgct |
34793058 |
T |
|
| Q |
101 |
tttaagtcattttgtgtgagctcgaattctgtaagaccatcgttctgaagttgaaggagaatgtcaaggaaatctttcttcttagggtccctcctagaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34793059 |
tttaagtcattttgtgtgagctcgaattctgtaagaccatcgtcctgaagttgaaggagaatgtcaaggaaatctttcttcttagggtccctcctagaca |
34793158 |
T |
|
| Q |
201 |
tcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatccttaannnnnnnnaattcggccagtgagaacatcaacccaaccta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
34793159 |
tcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatccttaattttttttaatttggccagtgagaacatcaacccaaccta |
34793258 |
T |
|
| Q |
301 |
acataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcttcctgccaagctctcccaatctgtaaccttcatcgtcatatttccttcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34793259 |
acataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcctcctgccaagctctcccaatctgtaaccttcatcgtcatatttccttcc |
34793358 |
T |
|
| Q |
401 |
aaatatacacctacagatcatgttgtttgttgtttcaatcaacatctcactaaggtt |
457 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34793359 |
aaatatacacctacagatcatcttgtttgttgtttcaatcaacatctcactaaggtt |
34793415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 60 - 457
Target Start/End: Complemental strand, 34417396 - 34417001
Alignment:
| Q |
60 |
atgaggagaaagggatagatagaaaaaccattaagagtgcttttaagtcattttgtgtgagctcgaattctgtaagaccatcgttctgaagttgaaggag |
159 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || || |||| | ||||||| | ||||||||||||||| |
|
|
| T |
34417396 |
atgatgagaaagggataga-agaaaaaccattaacagtgcttttaagtcattctgtgtgaggtctaactctgaacgaccatcatcctgaagttgaaggag |
34417298 |
T |
|
| Q |
160 |
aatgtcaaggaaatctttcttcttagggtccctcctagacatcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatcctta |
259 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||| ||| |||||||||||| |||||||||| ||||| |||||||| |||||||||| ||| ||||| |
|
|
| T |
34417297 |
aatgtcgaggaaatctttcttgttggggtccctcgtagccatcttatgctcgacaattacactatcaaagaaatcattcatttcttcaaaagtggcctta |
34417198 |
T |
|
| Q |
260 |
annnnnnnnaattcggccagtgagaacatcaacccaacctaacataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcttcctgcca |
359 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||| | ||||| |||||||| |
|
|
| T |
34417197 |
a-aatttttaatttggccagtgagaacatcaacccaacccaacaaaggaaacaaatctcctatactaagatctaaaacttgagccattatcctcctgcca |
34417099 |
T |
|
| Q |
360 |
agctctcccaatctgtaaccttcatcgtcatatttccttccaaatatacacctacagatcatgttgtttgttgtttcaatcaacatctcactaaggtt |
457 |
Q |
| |
|
|| ||||| |||||| |||| ||| | ||||| |||||||||||||||||||||||||| |||||||||| ||||| | ||||||||| | |||||| |
|
|
| T |
34417098 |
agttctccaaatctgcaaccatcaccatcatacttccttccaaatatacacctacagattatgttgtttgcagtttctagcaacatctcgccaaggtt |
34417001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University