View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21600_low_10 (Length: 440)
Name: NF21600_low_10
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 21078575 - 21078151
Alignment:
| Q |
1 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgatgctgcgctttttctttttatgggaacttggagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21078575 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgatgctgcgttttttctttttatgggaacttggaggc |
21078476 |
T |
|
| Q |
101 |
aaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacatatcactctgttgctccaagaaggagacagggaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21078475 |
aaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacatatcactctgttgctccaagaaggagacagggaaga |
21078376 |
T |
|
| Q |
201 |
aggatgtggttggagactcaatacccttttcgcggtgcgatctcatgttggaaggaaaaaccttatcatggtcaagaaaagcatgcttctgcttcctatg |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
21078375 |
aggatgtggtcggagactcaatacccttttcgcagtgcgatctcatgttggacggaaaaaccttatcatagtcaagaaatgcatgcttctgcttcctatg |
21078276 |
T |
|
| Q |
301 |
atcatcaagaacatcatgtttatgtttcttggtcagaggttgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccaccgagtgcagtgccg |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21078275 |
atcatcaagaacatcatgtttctgtttcttggtcagaggttgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccgccgagtgcagtgccg |
21078176 |
T |
|
| Q |
401 |
gaggtgaagattctgtggcacaaat |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
21078175 |
gaggtgaagattctgtggcacaaat |
21078151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3073724 - 3073780
Alignment:
| Q |
1 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
57 |
Q |
| |
|
||||||||| |||||| ||| |||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
3073724 |
agacatatcgaagagtgtatatgctccattaagatgttcatgatcaatgatatttct |
3073780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27732088 - 27732144
Alignment:
| Q |
1 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
57 |
Q |
| |
|
|||||||| |||||| | |||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
27732088 |
agacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatatttct |
27732144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University