View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_low_11 (Length: 411)
Name: NF21600_low_11
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Original strand, 45870105 - 45870491
Alignment:
| Q |
10 |
aagaatatgtaactcttatgaagagcacgtgagcttgtatataattttcatcaagccagttggactggtcttatcactcatgcttgctgtacctgtaatt |
109 |
Q |
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| T |
45870105 |
aagaatatgtaactcttatgaagagcacgtgagcttgtatataattttcatcaagccagttggactggtcttatcactcatgcttgctgtacctgtaatt |
45870204 |
T |
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| Q |
110 |
gtttattggtagtttattagttggaattttcctctcttgtactgaaattaatggatttaaattattcggagatacgtgaaaaatctcgtagtctttctca |
209 |
Q |
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| T |
45870205 |
gtttattggtagtttattagttggaattttcctctcttgtactgaaattaatggatttaaattattcggagatacctgaagaatctcgtagtctttctca |
45870304 |
T |
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| Q |
210 |
atttggttgtgcaaaggcagaagctagaagtttgtaagtgataggtaccaaagtgaagtgcctgacaagttatagggagatacttgtgtttctttaatta |
309 |
Q |
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| T |
45870305 |
atttggttgtgcaaaggcagaagctagaagtttgtaagtgataggtaccaaagtgaagtgcctgacaagttatagggagatacttgtgtttctttaatta |
45870404 |
T |
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| Q |
310 |
ttaatttgaattaattgttagctgagtttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattt |
396 |
Q |
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| T |
45870405 |
ttaatttgaattaattgttagctgagtttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattt |
45870491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 45857552 - 45857781
Alignment:
| Q |
10 |
aagaatatgtaactcttatgaagagcacgtgagcttgtatataattttcatcaagccagttggactggtcttatcactcatgcttgctgtacctgtaatt |
109 |
Q |
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| T |
45857552 |
aagaatttgtaactcttatgaagagcacgtgagcttgtatatatttttcatcaacccagttggactagtcttatcactcatgcttgttgtacctgtaatt |
45857651 |
T |
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| Q |
110 |
gtttattggtagtttattagttggaattttcctctcttgtactgaaattaatggatttaaattattcggagatacgtgaaaaatctcgtagtctttctca |
209 |
Q |
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||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
45857652 |
gtttattggtagtctattacttggaattttcctctc--gtactgaaattaatggatttaaattattcggagatacctgaagaatctcgttgtctttctca |
45857749 |
T |
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| Q |
210 |
atttggttgtgcaaaggcagaagctagaagtt |
241 |
Q |
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| T |
45857750 |
atttggttgtccaaagacagaagctagaagtt |
45857781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 348
Target Start/End: Complemental strand, 45980573 - 45980448
Alignment:
| Q |
223 |
aaggcagaagctagaagtttgtaagtgataggtaccaaagtgaagtgcctgacaagttatagggagatacttgtgtttctttaattattaa-tttgaatt |
321 |
Q |
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||||||||||||||| |||||||||||| |||||||||||| || | | | ||| || |||||||||||| || || |||| ||||||| ||| | || |
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| T |
45980573 |
aaggcagaagctagaggtttgtaagtgacaggtaccaaagtaaaatacattacaggtcgcagggagatacttctgctt-tttatttattaactttaattt |
45980475 |
T |
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| Q |
322 |
aattgttagctgagtttactaggttgt |
348 |
Q |
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||||||||||||||||| |||||||| |
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| T |
45980474 |
cattgttagctgagtttattaggttgt |
45980448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 45980741 - 45980689
Alignment:
| Q |
10 |
aagaatatgtaactcttatgaagagcacgtgagcttgtatataattttcatca |
62 |
Q |
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|||||| |||||||||||||||||| || |||||||||||||| ||||||||| |
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| T |
45980741 |
aagaatttgtaactcttatgaagagtacttgagcttgtatatatttttcatca |
45980689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 45980662 - 45980597
Alignment:
| Q |
109 |
tgtttattggtagtttattagttggaattttcctctcttgtactgaaattaatggatttaaattattc |
176 |
Q |
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| T |
45980662 |
tgtttattcgtagtctattagttagaatttccttctcatg--ctgaaattagtggatttaaattattc |
45980597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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