View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21600_low_15 (Length: 362)
Name: NF21600_low_15
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_15 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 580609 - 580970
Alignment:
| Q |
1 |
ttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgtcggtgttccttgtaaacgtgacaaatcatttatctgcttccctgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580609 |
ttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgtcggtgttccttgtaaacgtgacaaatcatttatctgcttccctgatt |
580708 |
T |
|
| Q |
101 |
ctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacattataattaagtccccatgccatgcttcggctaaaatcaatttatatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
580709 |
ctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacattataattaagtccccatgccatgcttcagctaaaatcaatttatatga |
580808 |
T |
|
| Q |
201 |
gagccaacactttgtaagttatatgtcagatttccatgctgctgcacttcttggtgaattcagtcactcaaaatctatcaaattcgaatcatcaaaggta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
580809 |
gagccaacactttgtaagttatatgtcagatttccatgctgctgcacttcttggtgaattcagtcactcaaaatctatcaaattcgagtcatcaaaggta |
580908 |
T |
|
| Q |
301 |
agtatattattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttattttta |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580909 |
agtatattattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttattttta |
580970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 1214316 - 1214381
Alignment:
| Q |
138 |
tatatcacaaaacattataattaagtccccatgccatgcttcggctaaaatcaatttatatgagag |
203 |
Q |
| |
|
|||| ||||| ||||| |||| | |||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
1214316 |
tataccacaacacattttaatgacgtccccatgccatgcttctactaaaatcattttacatgagag |
1214381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University