View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_low_19 (Length: 310)
Name: NF21600_low_19
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 131 - 296
Target Start/End: Complemental strand, 40855262 - 40855097
Alignment:
| Q |
131 |
gattatttgtgaaaagataatgaaaagaaagtgtacctacagcgaactttgtcaaaccaggcagatctaccagtgttaagttgacaactatcaacaaata |
230 |
Q |
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| T |
40855262 |
gattatttgtgaaaagataatgaaaataaagcgtacctacagcgaactttgtcaaaccaggcagatctaccagtgttaagttgacaactatcaacaaata |
40855163 |
T |
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| Q |
231 |
taaaaatagttagaacaacaacaacaacattaattagatgcagactgtaatcattacaccacaggt |
296 |
Q |
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| T |
40855162 |
taaaaatagttagaacaacaacaacaacattaattagatacggactgtaatcattacaccacaggt |
40855097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40855392 - 40855329
Alignment:
| Q |
1 |
ttatcaacatatgagtggatcaagctttcaatgtcttgaacaatactttctggttgtccctctg |
64 |
Q |
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| T |
40855392 |
ttatcaacatatgagtggatcaagctttcaatgtcttgaacaatactttctggttgtccctctg |
40855329 |
T |
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