View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_low_21 (Length: 288)
Name: NF21600_low_21
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_21 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 18903662 - 18903385
Alignment:
| Q |
10 |
cttctcttacctttgttcgctgttcctggaatcacttccaatgcggtgagtcacttttctatattctttttcttaggacatgtttgtttggaaatttaat |
109 |
Q |
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| T |
18903662 |
cttctcttacctttgttcgctgttcctggaatcacttccaatgcggtgagtcacttttctatattctttttcttaggacatgtttgtttggaaatttaat |
18903563 |
T |
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| Q |
110 |
taaataagttgnnnnnnnnnnnnnnnnnnggttgtagacacttaatgagacttgtggttactttgatggttcattcaatagagatgctaaaggtatgtat |
209 |
Q |
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| T |
18903562 |
taaataa-ttgtttttattttttgtttttggttgtagacacttaatgagacttgtggttactttgatggttcattcaatagagatactaaaggtatgtat |
18903464 |
T |
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| Q |
210 |
tatttcttactcataacttcaaatctggtcagtttgagaaaatagaagtgattgtgtgtaattacaagtgtcggtgtca |
288 |
Q |
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| T |
18903463 |
tatttcttactcataacttcaaatctggtcaatttgagaaaatagaagtgattgtgtgtaattacaagtgtcggtgtca |
18903385 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 19176016 - 19175971
Alignment:
| Q |
242 |
tttgagaaaatagaagtgattgtgtgtaattacaagtgtcggtgtc |
287 |
Q |
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| T |
19176016 |
tttgggaaaatagaagtgattgtatgtaatcacaagtgtcagtgtc |
19175971 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 28131250 - 28131206
Alignment:
| Q |
244 |
tgagaaaatagaagtgattgtgtgtaattacaagtgtcggtgtca |
288 |
Q |
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| T |
28131250 |
tgagaaaatagaagtgattgtatgtaatcaaaagtgtcagtgtca |
28131206 |
T |
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