View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21600_low_22 (Length: 279)

Name: NF21600_low_22
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21600_low_22
NF21600_low_22
[»] chr5 (13 HSPs)
chr5 (10-260)||(38185288-38185540)
chr5 (10-260)||(38212817-38213069)
chr5 (10-260)||(38183179-38183431)
chr5 (10-260)||(38214926-38215178)
chr5 (10-231)||(38182849-38183072)
chr5 (10-231)||(38188059-38188282)
chr5 (10-231)||(38210075-38210298)
chr5 (18-248)||(38443096-38443328)
chr5 (10-231)||(38169528-38169751)
chr5 (10-231)||(38215285-38215507)
chr5 (17-205)||(38453166-38453352)
chr5 (27-231)||(38197370-38197576)
chr5 (47-98)||(28382794-28382845)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 38185540 - 38185288
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38185540 atgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 38185441  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  38185440 catgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtactgagagt 38185341  T
Q  208 gaaaataggattcgagaaaagacgtctgaaacagttgggacgtgtgaatacgt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38185340 gaaaataggattcgagaaaagacgtctgaaacagttgggacgtgtgaatacgt 38185288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 38212817 - 38213069
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38212817 atgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 38212916  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  38212917 catgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtactgagagt 38213016  T
Q  208 gaaaataggattcgagaaaagacgtctgaaacagttgggacgtgtgaatacgt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38213017 gaaaataggattcgagaaaagacgtctgaaacagttgggacgtgtgaatacgt 38213069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 38183431 - 38183179
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  38183431 atgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcgacgatgatgattttattgtctccaccgatgtaggaataacgacgatgat 38183332  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||    
T  38183331 catgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactgagagt 38183232  T
Q  208 gaaaataggattcgagaaaagacgtctgaaacagttgggacgtgtgaatacgt 260  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  38183231 gaaaagagggttcgagaaaagacgtctgaaacagttgggacgtgtgaatacgt 38183179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 38214926 - 38215178
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  38214926 atgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcgacgatgatgattttattgtctccaccgatgtaggaataacgacgatgat 38215025  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||    
T  38215026 catgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactgagagt 38215125  T
Q  208 gaaaataggattcgagaaaagacgtctgaaacagttgggacgtgtgaatacgt 260  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  38215126 gaaaagagggttcgagaaaagacgtctgaaacagttgggacgtgtgaatacgt 38215178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 38182849 - 38183072
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38182849 atgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacgatgat 38182948  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||    
T  38182949 catgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactgagagt 38183048  T
Q  208 gaaaataggattcgagaaaagacg 231  Q
    ||||| ||| ||||||||||||||    
T  38183049 gaaaagagggttcgagaaaagacg 38183072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 38188282 - 38188059
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38188282 atgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacgatgat 38188183  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||    
T  38188182 catgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactgagagt 38188083  T
Q  208 gaaaataggattcgagaaaagacg 231  Q
    ||||| ||| ||||||||||||||    
T  38188082 gaaaagagggttcgagaaaagacg 38188059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 38210075 - 38210298
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38210075 atgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacgatgat 38210174  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||    
T  38210175 catgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactgagagt 38210274  T
Q  208 gaaaataggattcgagaaaagacg 231  Q
    ||||| ||| ||||||||||||||    
T  38210275 gaaaagagggttcgagaaaagacg 38210298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 38443328 - 38443096
Alignment:
Q  18 ggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgatcatgaaga 117  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38443328 ggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacgatgatcatgaaga 38443229  T
Q  118 gaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtaccgag--tgaaaatag 215  Q
    | |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||  |||||| ||    
T  38443228 gcagtaagcctaggttggatttctccaccataagtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtattgagaatgaaaagag 38443129  T
Q  216 gattcgagaaaagacgtctgaaacagttgggac 248  Q
    | ||||||||||||||  |||||| ||||||||    
T  38443128 ggttcgagaaaagacggatgaaactgttgggac 38443096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 38169751 - 38169528
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  38169751 atgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgaagatgat 38169652  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||   ||||    
T  38169651 catgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtactgagagt 38169552  T
Q  208 gaaaataggattcgagaaaagacg 231  Q
    | ||| ||| ||||||||||||||    
T  38169551 gtaaagagggttcgagaaaagacg 38169528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 38215507 - 38215285
Alignment:
Q  10 atgaacgtggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgat 109  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38215507 atgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacgatgat 38215408  T
Q  110 catgaagagaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagt 207  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||    
T  38215407 catgaagagcagtaagcctaggttgga-ttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactgagagt 38215309  T
Q  208 gaaaataggattcgagaaaagacg 231  Q
    ||||| ||| ||| ||||||||||    
T  38215308 gaaaagagggttcaagaaaagacg 38215285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 38453166 - 38453352
Alignment:
Q  17 tggaaagctttgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgatcatgaag 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38453166 tggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgatcatgaag 38453265  T
Q  117 agaagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtaccga 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||    
T  38453266 agaagtaagccttggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaa--gttttgagagggtaccga 38453352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 38197370 - 38197576
Alignment:
Q  27 tgccatgaggtcggagaagatgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacgatgatcatgaagagaagtaagc 126  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||    
T  38197370 tgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgaagatgatcatgaagagcagtaagc 38197469  T
Q  127 ctaggttggatttttccaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac--cgagtgaaaataggattcgaga 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||   ||||| ||| ||| |||||||    
T  38197470 ctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtactgagagtgtaaagagggttcgaga 38197569  T
Q  225 aaagacg 231  Q
    |||||||    
T  38197570 aaagacg 38197576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 28382794 - 28382845
Alignment:
Q  47 tgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaata 98  Q
    ||||| ||||||||||||||| ||||||  |||| |||||||||||||||||    
T  28382794 tgatactacgatcgacggtgaggattttggtgtcaccgccgatgtaggaata 28382845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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