View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21600_low_25 (Length: 250)
Name: NF21600_low_25
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 38215524 - 38215764
Alignment:
| Q |
2 |
ttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215524 |
ttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38215623 |
T |
|
| Q |
102 |
gcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgttgactcgct |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38215624 |
gcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgct |
38215723 |
T |
|
| Q |
202 |
caattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38215724 |
caattccgttcaagtttttccttttgaagaatattcatctc |
38215764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38182833 - 38182592
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38182833 |
cttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
38182734 |
T |
|
| Q |
101 |
cgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgttgactcgc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38182733 |
cgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgc |
38182634 |
T |
|
| Q |
201 |
tcaattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38182633 |
tcaattccgttcaagtttttccttttgaagaatattcatctc |
38182592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 38188298 - 38188539
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188298 |
cttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
38188397 |
T |
|
| Q |
101 |
cgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgttgactcgc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38188398 |
cgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgc |
38188497 |
T |
|
| Q |
201 |
tcaattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38188498 |
tcaattccgttcaagtttttccttttgaagaatattcatctc |
38188539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38210059 - 38209818
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210059 |
cttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
38209960 |
T |
|
| Q |
101 |
cgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgttgactcgc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38209959 |
cgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgc |
38209860 |
T |
|
| Q |
201 |
tcaattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38209859 |
tcaattccgttcaagtttttccttttgaagaatattcatctc |
38209818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 38185556 - 38185797
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185556 |
cttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
38185655 |
T |
|
| Q |
101 |
cgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgttgactcgc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38185656 |
cgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgc |
38185755 |
T |
|
| Q |
201 |
tcaattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38185756 |
tcaattccgttcaagtttttccttttgaagaatattcatctc |
38185797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38212801 - 38212560
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38212801 |
cttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
38212702 |
T |
|
| Q |
101 |
cgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgttgactcgc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38212701 |
cgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcgactcgc |
38212602 |
T |
|
| Q |
201 |
tcaattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38212601 |
tcaattccgttcaagtttttccttttgaagaatattcatctc |
38212560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 38169767 - 38170008
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38169767 |
cttcaagtatcaactccttggtgaagatttcgatgctttgatcccaatttataacgaagaagatctcaatcatattatgttcgagtatgatcgtatgtgt |
38169866 |
T |
|
| Q |
101 |
cgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgttgactcgc |
200 |
Q |
| |
|
| |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
38169867 |
cacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgtcaaatcgc |
38169966 |
T |
|
| Q |
201 |
tcaattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38169967 |
tcaatttcgttcgagtttctccttttgaagaatattcatctc |
38170008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38453143 - 38452902
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
38453143 |
cttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgttagagtatgatcatatgtgt |
38453044 |
T |
|
| Q |
101 |
cgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttccgttgactcgc |
200 |
Q |
| |
|
| |||||||| |||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
38453043 |
cacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccttgttaacaacaacaaggcatcttttgattctttaacttccgtcgactcgc |
38452944 |
T |
|
| Q |
201 |
tcaattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38452943 |
tcaattccgttcaagtttctccttttgaagaatattcatctc |
38452902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 38443352 - 38443540
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443352 |
cttcaagtatcaactccttggtgaagattttgatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
38443451 |
T |
|
| Q |
101 |
cgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttc |
189 |
Q |
| |
|
| |||||||| |||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443452 |
cacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttc |
38443540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 38219947 - 38220126
Alignment:
| Q |
63 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38219947 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaa |
38220046 |
T |
|
| Q |
163 |
caaggcatcttttgattctttggcttccgttgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38220047 |
caaggcatcttttgattctttggcttccatcaaatcgctcaattccgttcaagtctctccttttgaagaatattcatctc |
38220126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 38155845 - 38156027
Alignment:
| Q |
8 |
tatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgctttt |
107 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||||| | |||||| | ||| |||||| |
|
|
| T |
38155845 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgctttt |
38155944 |
T |
|
| Q |
108 |
cacaaaagtctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttcc |
190 |
Q |
| |
|
||| |||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
38155945 |
cacgaaagcctgcaaagttgagggtcttcctcttccctctccctattagcaacaacaaggcatcttttaattctttggcttcc |
38156027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 28341042 - 28341144
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgt |
100 |
Q |
| |
|
||||||||| || |||| |||||||||| | ||| ||||||| | ||| | ||||| || |||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
28341042 |
cttcaagtaccagctccctggtgaagatcttaatgatttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgt |
28341141 |
T |
|
| Q |
101 |
cgc |
103 |
Q |
| |
|
||| |
|
|
| T |
28341142 |
cgc |
28341144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38183447 - 38183476
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagattt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38183447 |
cttcaagtatcaactccttggtgaagattt |
38183476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 38214910 - 38214881
Alignment:
| Q |
1 |
cttcaagtatcaactccttggtgaagattt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38214910 |
cttcaagtatcaactccttggtgaagattt |
38214881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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