View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_low_28 (Length: 214)
Name: NF21600_low_28
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 18902874 - 18902731
Alignment:
| Q |
41 |
aaatatagtgctttaatgattttctaatgtgacagacattttgaaacaatgttttaattgcaattgtgggtactggttacattgaggataaatacaactg |
140 |
Q |
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| T |
18902874 |
aaatatagtgctttaatgattttctaatgtgacagacattttgaaacaatgttttaattgcaattgtgggtactggttacattgaggataaatacaactg |
18902775 |
T |
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| Q |
141 |
atgctgcaattatggagtatttctaataaatgttatttggtgat |
184 |
Q |
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| T |
18902774 |
atgctgcaattagggagtatttctaataaatgttatttggtgat |
18902731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18902890 - 18902935
Alignment:
| Q |
1 |
atccctcacctcttggtacctccataagtagaataagaaaaaatat |
46 |
Q |
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| T |
18902890 |
atccctcacctcttggtacctccataagtagaataagaaaaaatat |
18902935 |
T |
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