View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_low_3 (Length: 633)
Name: NF21600_low_3
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_3 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 139 - 633
Target Start/End: Original strand, 12013065 - 12013553
Alignment:
| Q |
139 |
taaggatttaccatttatctaatgagattcctttcctgtcnnnnnnntaaaataagagagattttgagttaactagtctaactatagaaatgattcatgg |
238 |
Q |
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| T |
12013065 |
taaggatttaccatttatctaatgagattcctttcctgtcaaaaa---aaaaaaaaagagattttaagttaactagtctatctttagaaatgattcatgg |
12013161 |
T |
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| Q |
239 |
caacacattatggcgtaatttgattcacgtcaccgaccccattgagtgggaaaagaaaagactttagtttttgttgacattgttcatgtaatacaaacaa |
338 |
Q |
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| T |
12013162 |
caacacattatggtgtaatttgattcatgtcaccgaccccatttagtgggaaaagaaaagactttagtttttgttgacattgttcatgtaatgcaaacaa |
12013261 |
T |
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| Q |
339 |
tatatcaaacaccaattagacatttggagtgtatttttctagcagcttaaggaaatgtctagaaagagtaatacctaaaatcaatattgtatcttacaac |
438 |
Q |
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| T |
12013262 |
tatatcaaacaccaattagacaattggagtctatttttctagcagtttaaggaaatgttaagaaagagt-atacctaaaattaatattgtatcttataac |
12013360 |
T |
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| Q |
439 |
gttttagagtgnnnnnnnnnnctaaaagaaaaacgattttagagtatctaagtaaaacctaggattggcttccttattgccataaatttcatcaagattc |
538 |
Q |
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| T |
12013361 |
attttagagtg-tctttctttct-aaagaaaaacgattttagagtatctaagtaaaacctaggattggcttccctattgccataaatttcatcaagattc |
12013458 |
T |
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| Q |
539 |
tagtatgagtagcaacagggttagcattttgtctgttacaatgcatcatctgaaatcatgtaaatttcaactttagtgtattcagtctttattct |
633 |
Q |
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| T |
12013459 |
tagtatgagtagcaacagggttagcattttgtctgttacaatgcatcatctgaaatcatgtaaatatcaactttagtgtattcagtctttattct |
12013553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 11991406 - 11991558
Alignment:
| Q |
27 |
tttgttgaaagagattgtaatgctgtagcacgtagtcttgtcagcttctcactttctg-tggttgtatgctttgggaaggcaaagttcctgaccaaatta |
125 |
Q |
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|||||| |||||||||| ||| ||||||||| ||||||||||||||| ||||||||| ||| |||| ||||||||||| ||| |||||||||||||||| |
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| T |
11991406 |
tttgttcaaagagattgcaatactgtagcacatagtcttgtcagcttagcactttctgctgggtgtaagctttgggaagccaatgttcctgaccaaatta |
11991505 |
T |
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| Q |
126 |
tggctgctgtttgtaaggatttaccatttatctaatgagattcctttcctgtc |
178 |
Q |
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| T |
11991506 |
tggcttctgtttgtaaggatttaccatttatctaatgaaattcctttcctgtc |
11991558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 191 - 395
Target Start/End: Original strand, 12024514 - 12024713
Alignment:
| Q |
191 |
taagagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatggcgtaatttgattcacgtcaccgaccccattgagtgggaa |
290 |
Q |
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| T |
12024514 |
taagagagattttcagttaactagtctatctttagaaatgattcatgacaacacattatggcatcacttgattcatgtcactggccccatttagtgg--- |
12024610 |
T |
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| Q |
291 |
aagaaaagactttagtttttgttgacattgttcatgtaatacaaacaatatatcaaacaccaattagacatttggagtgtatttttctagcagcttaagg |
390 |
Q |
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| T |
12024611 |
--gaaaagactttagtttttgttgatgttgttcgagaactatagacaagatatcagacaccaattaaacattcagagtctaattttcaagcaatttaaag |
12024708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 194 - 350
Target Start/End: Original strand, 11991588 - 11991733
Alignment:
| Q |
194 |
gagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatggcgtaatttgattcacgtcaccgaccccattgagtgggaaaag |
293 |
Q |
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| T |
11991588 |
gagagattttgagttaacaagtctatcttcagaaatgattcatgg---cacattatgacataatttgattcgcgtcaccgaccccatttagtg-----aa |
11991679 |
T |
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| Q |
294 |
aaaagactttagtttttgttgacattgttcatgtaatacaaacaatatatcaaacac |
350 |
Q |
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| T |
11991680 |
aaaagactttagtttttgttg---tcgttcatgtgatacatacaatatatcaaacac |
11991733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 549
Target Start/End: Original strand, 12024785 - 12024826
Alignment:
| Q |
508 |
ttccttattgccataaatttcatcaagattctagtatgagta |
549 |
Q |
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| T |
12024785 |
ttccctattgccataaatttcaacaagattctagtatgagta |
12024826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 608
Target Start/End: Complemental strand, 43496351 - 43496269
Alignment:
| Q |
526 |
ttcatcaagattctagtatgagtagcaacaggg-ttagcattttgtctgttacaatgcatcatctgaaatcatgtaaatttcaa |
608 |
Q |
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| T |
43496351 |
ttcatcaagattctagtacgagtaaaaacagggattagcattttgtcttttgtaatgcat-atctaaaatcaagtaaatatcaa |
43496269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 2090629 - 2090675
Alignment:
| Q |
243 |
acattatggcgtaatttgattcacgtcaccgaccccattgagtggga |
289 |
Q |
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| T |
2090629 |
acattatggcgtaatttgatccatgtacccgaccccattgagtggga |
2090675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 43497657 - 43497599
Alignment:
| Q |
192 |
aagagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatg |
250 |
Q |
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| T |
43497657 |
aagagagaatttgagttaactaatctatctttagaaatgattcatgataacatattatg |
43497599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 17269055 - 17269005
Alignment:
| Q |
243 |
acattatggcgtaatttgattcacgtcaccgaccccattgagtgggaaaag |
293 |
Q |
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| T |
17269055 |
acattatggcgtaatttgatccatgtagccgaccccatttagtgggaaaag |
17269005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 52532682 - 52532632
Alignment:
| Q |
243 |
acattatggcgtaatttgattcacgtcaccgaccccattgagtgggaaaag |
293 |
Q |
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| T |
52532682 |
acattatggcgtaatttgattcatgtagccgaccccacttagtgggaaaag |
52532632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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