View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_low_6 (Length: 545)
Name: NF21600_low_6
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 29143869 - 29144315
Alignment:
| Q |
18 |
caaacttgtcaaattttgcattgattcgtttttatggcatttgttttcaatacacgtgcatcattcctattgccatgataaaaccattgacaactatatg |
117 |
Q |
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| T |
29143869 |
caaacttgtcaaattttgcattgattcgtttttatggcatttgtttccaatacacgtgcatcattcctattgccatgataaaaccattgacaactatatg |
29143968 |
T |
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| Q |
118 |
aacaaccttaatttgttgatannnnnnnggtatgttatttatggttgaggtccccactacaaaccgagtgacaaagggatcttggatgttatactattaa |
217 |
Q |
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| T |
29143969 |
aacaaccttaatttgttgatatttttttggtatgttatttatggttgaggtccccactacaaaccgagtgacaaagggatcttggatgttatactattaa |
29144068 |
T |
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| Q |
218 |
atcactgttccaaacttgtttacactttattacatttaaattttctcaaatttgatatatagctttggcaaaatttaaacctttttatctactttaagtt |
317 |
Q |
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| T |
29144069 |
atcactgttccaaacttttttacactttattacatttaaattttctcaaatttgatatatagctttggcaaaatttaaacctttttatctactctaagtt |
29144168 |
T |
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| Q |
318 |
gaaacaaacacactaatgcaagtttccacttcactgtcaagtttcaacaccttatgtttctactatacccttaaatacctcactcaattattatttttct |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29144169 |
gaaacaaacacactaatgcaagtttccacttcactgtcaagtttcaacaccttatgtttctactatacccttaaatacctccctcaattattatttttct |
29144268 |
T |
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| Q |
418 |
aattttcatgtccaaaacaaccaaacacatttataagcaatcagtgt |
464 |
Q |
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| T |
29144269 |
aattttcacgtccaaaacaaccaaacacatttataaccaatcggtgt |
29144315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 462 - 537
Target Start/End: Original strand, 29144474 - 29144549
Alignment:
| Q |
462 |
tgtcaaccaagcttttattttgtactacttaggcagtagttttttcctctttatatcagaaccttctctctgtgct |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144474 |
tgtcaaccaagcttttattttgtactacttaggcagtagttttttcctctttatatcagaaccttctctctgtgct |
29144549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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